Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238028212
Identifier: 238028212
GI number: 238028212
Start: 3035664
End: 3037493
Strand: Direct
Name: 238028212
Synonym: bglu_1g26650
Alternate gene names: NA
Gene position: 3035664-3037493 (Clockwise)
Preceding gene: 238028210
Following gene: 238028213
Centisome position: 77.71
GC content: 70.05
Gene sequence:
>1830_bases ATGCCAGCCCTCATCGAAGACTACGCGCTCGTCGGAGACGGCCACACCGCCGCCCTCATCTCACGCGACGGCTCGGTCGA CTGGCTCTGCTGGCCCCGCTTCGATTCGGGTGCCTGTTTCGCCGCGCTGGTCGGCACGCCCGAGCACGGCCGCTGGCTGC TGCGCCCCGCGGCCGACGCCAAACTCCTGTCGAGTACGCGCCGCTACCGCGGCGAGACGCTGATCCTCGAGACCGACTAC GAATGCGAGACGGGCGCCGTCACCGTGATCGACTTCATGCCGCCCGGCAACGGCTGGTCCGAACTCGTGCGGATCGTGGT CGGCAAGCGCGGCCACGTGCCGATGCAGATGGAGCTCGTGCTGCGCTTCGACTACGGCTTCTCGATCCCATGGGTCACGC GCCTGCCGCGCGAGGCGGGCGTGAAGGCGATCGCCGGGCCCGACACGGTGGTGCTGCGCACGCCCGTCAAGCTGGCCGGC GAGAACCTGCGCACCGTCGCCGAGTTCACCGTGCAGGCCGAGGAGCGCGTGCCGTTCTCGCTCGGCTATGCCCCCTCGCA CCTGCGGCCGCCGCCCGCGCGCGAGCCGCTGTCGATGCTCGCGCGCACCGAGAACCACTGGCTCGAGTGGTCCTCGCGCT GTCCGGTCCAGGGCCGCTACGCCGCCGCCGTGCGCCGCTCGCTGATCACGCTGAAGGCGCTCGCCTACGAACCGACGGGC GGCATCGTGGCCGCGCCCACCACCTCGCTGCCCGAGCAGCTGGGCGGCACGCGCAACTGGGACTACCGCTACTGCTGGCT GCGTGATGCCACCATCACGCTGCTCGCGCTGATGCGTGCCGGCTACTACGACGAGGCGCGCGCGTGGCGCGCCTGGCTCG GCCGCGTGATGGCGGGCTCGCCCGAGCAGATCCAGATCATGTACGGCATCGCCGGCGAGCGGCGCCTGCCCGAGATGGAA CTGGGCTGGCTGCCCGGCTACCAGAACTCGAAGCCGGTGCGGATCGGCAACAACGCGGCCGACCAGCTCCAGCTCGACGT GTTCGGCGAAGTGATGTCGGCGCTGCACCTGGCGCGCGTGGGCGGGCTGCAGGCCGACGACACGGTCTGGTCGGTGCAGT GCGCGCTGCTCACGCACCTCGAGAAGATCTGGCGCGAGCCCGACGAGGGCATCTGGGAGACGCGCGGCGGGCGCAAGCAC TTCACGTTCTCGAAGATCATGGCCTGGGTCGCGTTCGATCGCGCGATCAAGTCGGCCGAGCAGTTCCGGCTGTCCGCGCC GCTCGACCACTGGCGCGCGCTGCGCGACGTGATTCACGCCGACGTCTGCGAAAACGCCTGGAACGAACGCAAGCAGGCCT TCACCCAGAGCTACGGCAGCGACGAGCTCGACGCGAGCGTGCTGATGCTGCCGATGGTGGGCTTCCTGCCGCCGTCCGAC CCGCGCGTGGCGGCCACCGTCGAGGCGATCGAGCGCGAGCTGCTGCACGGCGGCTTCGTGATGCGCTATCGCACCACCGA TTTCGACGACGGCCTGCCGCCCGGCGAAGGCACCTTCCTCGCCTGCAGCTTCTGGCTGGTCGACAACTACGCGCTGCTCG GCCGGATCGACGACGCGCACCGGCTGTTCCGCCGGCTGCTCTCGCTCGCCAACGATCTCGGCCTGCTCGCCGAGGAATAC GATCCGGTGGAAGGGCGGCAGGTCGGCAATTTCCCGCAGGCGTTCTCGCACGTCGCGCTCGTGCATACGGCCATGAACCT GATGCATCACGAGGAAGAGATGGCGCTGGCGGCAGGCCAGCCGGTCGCGATCGAAACCGACGGCCACTGA
Upstream 100 bases:
>100_bases CCAGTGCGCCAGTATATGGGGCCTCGCGCGTTGCCGTCAATCGGCGCGGGTGCCGAGCCCCGGAAAGCCAATTGTCAGCC TCTGCGGAGAATTTCCCACC
Downstream 100 bases:
>100_bases GCGCGGCCCGCCCGCCGGCCGGGCGGCCCTGAAGCACGGCGCCGGCGCCGGCCTCACGACGCCAGCGGCGGGCCGCGCCG ACGATTCGCCGGATCACAAA
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Glucoamylase; Trehalose-Phosphatase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLLRPAADAKLLSSTRRYRGETLILETDY ECETGAVTVIDFMPPGNGWSELVRIVVGKRGHVPMQMELVLRFDYGFSIPWVTRLPREAGVKAIAGPDTVVLRTPVKLAG ENLRTVAEFTVQAEERVPFSLGYAPSHLRPPPAREPLSMLARTENHWLEWSSRCPVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRAGYYDEARAWRAWLGRVMAGSPEQIQIMYGIAGERRLPEME LGWLPGYQNSKPVRIGNNAADQLQLDVFGEVMSALHLARVGGLQADDTVWSVQCALLTHLEKIWREPDEGIWETRGGRKH FTFSKIMAWVAFDRAIKSAEQFRLSAPLDHWRALRDVIHADVCENAWNERKQAFTQSYGSDELDASVLMLPMVGFLPPSD PRVAATVEAIERELLHGGFVMRYRTTDFDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFRRLLSLANDLGLLAEEY DPVEGRQVGNFPQAFSHVALVHTAMNLMHHEEEMALAAGQPVAIETDGH
Sequences:
>Translated_609_residues MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLLRPAADAKLLSSTRRYRGETLILETDY ECETGAVTVIDFMPPGNGWSELVRIVVGKRGHVPMQMELVLRFDYGFSIPWVTRLPREAGVKAIAGPDTVVLRTPVKLAG ENLRTVAEFTVQAEERVPFSLGYAPSHLRPPPAREPLSMLARTENHWLEWSSRCPVQGRYAAAVRRSLITLKALAYEPTG GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRAGYYDEARAWRAWLGRVMAGSPEQIQIMYGIAGERRLPEME LGWLPGYQNSKPVRIGNNAADQLQLDVFGEVMSALHLARVGGLQADDTVWSVQCALLTHLEKIWREPDEGIWETRGGRKH FTFSKIMAWVAFDRAIKSAEQFRLSAPLDHWRALRDVIHADVCENAWNERKQAFTQSYGSDELDASVLMLPMVGFLPPSD PRVAATVEAIERELLHGGFVMRYRTTDFDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFRRLLSLANDLGLLAEEY DPVEGRQVGNFPQAFSHVALVHTAMNLMHHEEEMALAAGQPVAIETDGH >Mature_608_residues PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLLRPAADAKLLSSTRRYRGETLILETDYE CETGAVTVIDFMPPGNGWSELVRIVVGKRGHVPMQMELVLRFDYGFSIPWVTRLPREAGVKAIAGPDTVVLRTPVKLAGE NLRTVAEFTVQAEERVPFSLGYAPSHLRPPPAREPLSMLARTENHWLEWSSRCPVQGRYAAAVRRSLITLKALAYEPTGG IVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRAGYYDEARAWRAWLGRVMAGSPEQIQIMYGIAGERRLPEMEL GWLPGYQNSKPVRIGNNAADQLQLDVFGEVMSALHLARVGGLQADDTVWSVQCALLTHLEKIWREPDEGIWETRGGRKHF TFSKIMAWVAFDRAIKSAEQFRLSAPLDHWRALRDVIHADVCENAWNERKQAFTQSYGSDELDASVLMLPMVGFLPPSDP RVAATVEAIERELLHGGFVMRYRTTDFDDGLPPGEGTFLACSFWLVDNYALLGRIDDAHRLFRRLLSLANDLGLLAEEYD PVEGRQVGNFPQAFSHVALVHTAMNLMHHEEEMALAAGQPVAIETDGH
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68057; Mature: 67926
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLLRPAADA CCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEECCCCCH KLLSSTRRYRGETLILETDYECETGAVTVIDFMPPGNGWSELVRIVVGKRGHVPMQMELV HHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE LRFDYGFSIPWVTRLPREAGVKAIAGPDTVVLRTPVKLAGENLRTVAEFTVQAEERVPFS EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCEE LGYAPSHLRPPPAREPLSMLARTENHWLEWSSRCPVQGRYAAAVRRSLITLKALAYEPTG ECCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRAGYYDEARAWRAWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELGWLPGYQNSKPVRIGNNAADQLQLDVFGEVMSALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLTHLEKIWREPDEGIWETRGGRKHFTFSKIMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QFRLSAPLDHWRALRDVIHADVCENAWNERKQAFTQSYGSDELDASVLMLPMVGFLPPSD HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC PRVAATVEAIERELLHGGFVMRYRTTDFDDGLPPGEGTFLACSFWLVDNYALLGRIDDAH CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEHHCEEEEECCCHHH RLFRRLLSLANDLGLLAEEYDPVEGRQVGNFPQAFSHVALVHTAMNLMHHEEEMALAAGQ HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PVAIETDGH CEEEECCCC >Mature Secondary Structure PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLLRPAADA CCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEECCCCCH KLLSSTRRYRGETLILETDYECETGAVTVIDFMPPGNGWSELVRIVVGKRGHVPMQMELV HHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE LRFDYGFSIPWVTRLPREAGVKAIAGPDTVVLRTPVKLAGENLRTVAEFTVQAEERVPFS EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCEE LGYAPSHLRPPPAREPLSMLARTENHWLEWSSRCPVQGRYAAAVRRSLITLKALAYEPTG ECCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCC GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRAGYYDEARAWRAWLGRVMAGS CEEECCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC PEQIQIMYGIAGERRLPEMELGWLPGYQNSKPVRIGNNAADQLQLDVFGEVMSALHLARV CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH GGLQADDTVWSVQCALLTHLEKIWREPDEGIWETRGGRKHFTFSKIMAWVAFDRAIKSAE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QFRLSAPLDHWRALRDVIHADVCENAWNERKQAFTQSYGSDELDASVLMLPMVGFLPPSD HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC PRVAATVEAIERELLHGGFVMRYRTTDFDDGLPPGEGTFLACSFWLVDNYALLGRIDDAH CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEHHCEEEEECCCHHH RLFRRLLSLANDLGLLAEEYDPVEGRQVGNFPQAFSHVALVHTAMNLMHHEEEMALAAGQ HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PVAIETDGH CEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA