| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028166
Identifier: 238028166
GI number: 238028166
Start: 2979828
End: 2980412
Strand: Direct
Name: 238028166
Synonym: bglu_1g26170
Alternate gene names: NA
Gene position: 2979828-2980412 (Clockwise)
Preceding gene: 238028165
Following gene: 238028167
Centisome position: 76.28
GC content: 69.23
Gene sequence:
>585_bases ATGAAATCGGTCTGCGTCTATTGCGGTTCGGCCTCGGGCGTGCGCGGCGTGTATGCCGAAGCGGCGCGCGGCTTCGGCCA GGCGTTGGCCGCGGCCGAACTCACGCTCGTGTACGGCGGCGGCCGCGTCGGGCTGATGGGCATCGTCGCCGACGCGGTGC TGGCCGCCGGCGGACGCGCGATCGGCGTGATCCCGCAACTGCTGCTGGACAAGGAAGTCGGCCACCAGGGGCTGACCGAA CTGCATGTGGTGCCCGACATGCACCACCGCAAGAAGATGATGGCCGACCGGTCGGACGCGTTCGTCGCCATGCCGGGCGG CGCCGGCACGCTCGAGGAGTTCTTCGAGGTGTTCACCTGGGCGCAGCTCGGCTACCACCGCAAGCCGGTCGCGCTGCTCA ACGTCGAGGGCTTCTACGATCCGCTCGTGGCGATGTTGCGGCATACCGTCGACGAGGGCTTCATGGCCAATCCCTATCTC GACTCGCTCTGCATCGACACGACGGCCGGTGGCCTGCTCGACCAGCTGCGCCGCTATCGGCCGCCCGCGCGAGACAAGTG GCAACCGGCGGCCGAGGCGCCCTGA
Upstream 100 bases:
>100_bases GTTCGCGCCAGATCTTCGACGATCTCGTCTCGGGCAAGCTGCCCAAGCGACAATTCCATGATTACCTGCCGCCGCGCGGC GCGCAGAAGGACGCCAAGCC
Downstream 100 bases:
>100_bases GGCGCGCCGCCCTCCTCGCCGCGCCCGACCAGTGCGCGGGTCTTGCCCGCCAACCCGGCCCAGGCGCCGCGCCCCGATGT CCGTCCCGCTCGACCAGAGC
Product: putative Rossmann fold nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MKSVCVYCGSASGVRGVYAEAARGFGQALAAAELTLVYGGGRVGLMGIVADAVLAAGGRAIGVIPQLLLDKEVGHQGLTE LHVVPDMHHRKKMMADRSDAFVAMPGGAGTLEEFFEVFTWAQLGYHRKPVALLNVEGFYDPLVAMLRHTVDEGFMANPYL DSLCIDTTAGGLLDQLRRYRPPARDKWQPAAEAP
Sequences:
>Translated_194_residues MKSVCVYCGSASGVRGVYAEAARGFGQALAAAELTLVYGGGRVGLMGIVADAVLAAGGRAIGVIPQLLLDKEVGHQGLTE LHVVPDMHHRKKMMADRSDAFVAMPGGAGTLEEFFEVFTWAQLGYHRKPVALLNVEGFYDPLVAMLRHTVDEGFMANPYL DSLCIDTTAGGLLDQLRRYRPPARDKWQPAAEAP >Mature_194_residues MKSVCVYCGSASGVRGVYAEAARGFGQALAAAELTLVYGGGRVGLMGIVADAVLAAGGRAIGVIPQLLLDKEVGHQGLTE LHVVPDMHHRKKMMADRSDAFVAMPGGAGTLEEFFEVFTWAQLGYHRKPVALLNVEGFYDPLVAMLRHTVDEGFMANPYL DSLCIDTTAGGLLDQLRRYRPPARDKWQPAAEAP
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LOG family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322406, Length=207, Percent_Identity=40.5797101449275, Blast_Score=162, Evalue=3e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 20830; Mature: 20830
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSVCVYCGSASGVRGVYAEAARGFGQALAAAELTLVYGGGRVGLMGIVADAVLAAGGRA CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCH IGVIPQLLLDKEVGHQGLTELHVVPDMHHRKKMMADRSDAFVAMPGGAGTLEEFFEVFTW HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH AQLGYHRKPVALLNVEGFYDPLVAMLRHTVDEGFMANPYLDSLCIDTTAGGLLDQLRRYR HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHCC PPARDKWQPAAEAP CCCCCCCCCCCCCC >Mature Secondary Structure MKSVCVYCGSASGVRGVYAEAARGFGQALAAAELTLVYGGGRVGLMGIVADAVLAAGGRA CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCH IGVIPQLLLDKEVGHQGLTELHVVPDMHHRKKMMADRSDAFVAMPGGAGTLEEFFEVFTW HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH AQLGYHRKPVALLNVEGFYDPLVAMLRHTVDEGFMANPYLDSLCIDTTAGGLLDQLRRYR HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHCC PPARDKWQPAAEAP CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 2116366 [H]