| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is comC [H]
Identifier: 238027719
GI number: 238027719
Start: 2325783
End: 2326856
Strand: Reverse
Name: comC [H]
Synonym: bglu_1g21400
Alternate gene names: 238027719
Gene position: 2326856-2325783 (Counterclockwise)
Preceding gene: 238027720
Following gene: 238027718
Centisome position: 59.56
GC content: 71.14
Gene sequence:
>1074_bases ATGAAACATCTGATCCAGGCGGAACGACTCCGCCAACTCTGCGAGACGGCCGCGCTGCGGCGCGGCCTGAGCGCGACCCA CGCTGCCTGGTTCGCGCACGGCCTGGTCCGCACCTCGCTGATGGGCATCGACACGCATGGCGTGCGGCTGCTGCCGCTCT ATCTGCGTGAGCTCGACGAAGGGCGCAGCAATCCCGAGCCGGCGCTGCGCACCGTGCGGCGCTTTCAGGGCACTGCGCTC GTCGACGCCGACGCGGCGCCGGGCGTGGTGGCCGGTAGCCACGCGGCGCGCCTCGCGAGCGAACTGGCGCGCGAGTGCGG GGTGGGCGTGGTGGCGGTGGCGAATTCGAATCATTTCGGAGCCGCGTCGGTGTACGGCGAATGGATCGCCGCGCAAGGGC TGATCGGCATCGTGACGACCAGCGCCGCGGCACGCATGGCGCCGTTCAACGCGACCCGCGCGATGTTCGGCACCAATCCG ATCTGCTTCGCCGCGCCGGCCCGCGACGGCGACCTGTACCTGCTCGACATGGCCACCAGCCAGATCTCTTACTCGCAGGT CAAGCACTTCCGCCGCAACGGCATGGCGCTGCCGTCGGGCTGGGCGCTCGGCGCCGACGGCCAGCCGGTGACCGATCCGG CGCAAGTGGTCTCGCTCGCGACGCTCGGCGGCTACAAGGGGCAGGGGCTCGCGATGATGGTGCAGATCCTCAGCTGCCTG CTCACCGCGATGCCGCTCGATCACGCGCTGACGCATCTCGACGCCGAGCCCTACGACCGCGGCCGCGAGATCGGCCACTG CCTGATCGCGATCGACCCGGCCCGGTTCGGTTCGCTCGACGCCTTCACGGCCGGCGTGTCCTCGCTGATGCAGGCGATCC GCGAGACGCCCGCCGCCGAAGGCGAGCGCGTGCAGGTCGCGGGCGACCCGCAGAAGGCCGCGATCGCGCGCCGCACCGCG CAGGGCATCCCGCTCGACGACGACGAGTGGCGCGGCCTGCAGGCCGAAGCCGAGCGTCTCGGCCTCGGCCATCTCTTCTC GACCGACGACATGCCGCACAAGGAGACCGCATGA
Upstream 100 bases:
>100_bases TTCTTTCAGACCGGCGCCGCCGAGCCGCGCGTGCGCGAGCCGATCTACCTCGCGCCCGCCGGCGCGGCCGAATCCTCCCT CACGCTTGCGAGCTGACGAC
Downstream 100 bases:
>100_bases CATCCCCCCACACCCTGCCGTTCGATCAGCGCGACGGCCAGATCTGGTTCGACGGCGAATTCGTCGAGTGGAAGCACGCC AAGATTCACGTGCTCACGCA
Product: malate/L-lactate dehydrogenase
Products: NA
Alternate protein names: (R)-2-hydroxyacid dehydrogenase; (R)-sulfolactate dehydrogenase [H]
Number of amino acids: Translated: 357; Mature: 357
Protein sequence:
>357_residues MKHLIQAERLRQLCETAALRRGLSATHAAWFAHGLVRTSLMGIDTHGVRLLPLYLRELDEGRSNPEPALRTVRRFQGTAL VDADAAPGVVAGSHAARLASELARECGVGVVAVANSNHFGAASVYGEWIAAQGLIGIVTTSAAARMAPFNATRAMFGTNP ICFAAPARDGDLYLLDMATSQISYSQVKHFRRNGMALPSGWALGADGQPVTDPAQVVSLATLGGYKGQGLAMMVQILSCL LTAMPLDHALTHLDAEPYDRGREIGHCLIAIDPARFGSLDAFTAGVSSLMQAIRETPAAEGERVQVAGDPQKAAIARRTA QGIPLDDDEWRGLQAEAERLGLGHLFSTDDMPHKETA
Sequences:
>Translated_357_residues MKHLIQAERLRQLCETAALRRGLSATHAAWFAHGLVRTSLMGIDTHGVRLLPLYLRELDEGRSNPEPALRTVRRFQGTAL VDADAAPGVVAGSHAARLASELARECGVGVVAVANSNHFGAASVYGEWIAAQGLIGIVTTSAAARMAPFNATRAMFGTNP ICFAAPARDGDLYLLDMATSQISYSQVKHFRRNGMALPSGWALGADGQPVTDPAQVVSLATLGGYKGQGLAMMVQILSCL LTAMPLDHALTHLDAEPYDRGREIGHCLIAIDPARFGSLDAFTAGVSSLMQAIRETPAAEGERVQVAGDPQKAAIARRTA QGIPLDDDEWRGLQAEAERLGLGHLFSTDDMPHKETA >Mature_357_residues MKHLIQAERLRQLCETAALRRGLSATHAAWFAHGLVRTSLMGIDTHGVRLLPLYLRELDEGRSNPEPALRTVRRFQGTAL VDADAAPGVVAGSHAARLASELARECGVGVVAVANSNHFGAASVYGEWIAAQGLIGIVTTSAAARMAPFNATRAMFGTNP ICFAAPARDGDLYLLDMATSQISYSQVKHFRRNGMALPSGWALGADGQPVTDPAQVVSLATLGGYKGQGLAMMVQILSCL LTAMPLDHALTHLDAEPYDRGREIGHCLIAIDPARFGSLDAFTAGVSSLMQAIRETPAAEGERVQVAGDPQKAAIARRTA QGIPLDDDEWRGLQAEAERLGLGHLFSTDDMPHKETA
Specific function: Catalyzes the reduction of sulfopyruvate to (R)- sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynth
COG id: COG2055
COG function: function code C; Malate/L-lactate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LDH2/MDH2 oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1786727, Length=337, Percent_Identity=32.3442136498516, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1787020, Length=349, Percent_Identity=29.512893982808, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1790000, Length=335, Percent_Identity=25.0746268656716, Blast_Score=114, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17507179, Length=355, Percent_Identity=28.169014084507, Blast_Score=153, Evalue=1e-37, Organism=Caenorhabditis elegans, GI17536633, Length=356, Percent_Identity=27.247191011236, Blast_Score=139, Evalue=2e-33, Organism=Drosophila melanogaster, GI45553211, Length=306, Percent_Identity=31.6993464052288, Blast_Score=135, Evalue=5e-32, Organism=Drosophila melanogaster, GI24667912, Length=306, Percent_Identity=31.6993464052288, Blast_Score=135, Evalue=5e-32, Organism=Drosophila melanogaster, GI24667904, Length=306, Percent_Identity=31.6993464052288, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24667908, Length=306, Percent_Identity=31.6993464052288, Blast_Score=134, Evalue=7e-32, Organism=Drosophila melanogaster, GI24658010, Length=314, Percent_Identity=27.0700636942675, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648360, Length=292, Percent_Identity=26.3698630136986, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003767 [H]
Pfam domain/function: PF02615 Ldh_2 [H]
EC number: =1.1.1.272 [H]
Molecular weight: Translated: 37992; Mature: 37992
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLIQAERLRQLCETAALRRGLSATHAAWFAHGLVRTSLMGIDTHGVRLLPLYLRELDE CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GRSNPEPALRTVRRFQGTALVDADAAPGVVAGSHAARLASELARECGVGVVAVANSNHFG CCCCCCHHHHHHHHHCCCEEEECCCCCCCEECHHHHHHHHHHHHHCCCEEEEEECCCCCC AASVYGEWIAAQGLIGIVTTSAAARMAPFNATRAMFGTNPICFAAPARDGDLYLLDMATS HHHHHHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCEEEEECCHH QISYSQVKHFRRNGMALPSGWALGADGQPVTDPAQVVSLATLGGYKGQGLAMMVQILSCL HHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH LTAMPLDHALTHLDAEPYDRGREIGHCLIAIDPARFGSLDAFTAGVSSLMQAIRETPAAE HHHCCHHHHHHHCCCCHHHCCHHHCEEEEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC GERVQVAGDPQKAAIARRTAQGIPLDDDEWRGLQAEAERLGLGHLFSTDDMPHKETA CCEEEECCCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEECCCCCCCCCCC >Mature Secondary Structure MKHLIQAERLRQLCETAALRRGLSATHAAWFAHGLVRTSLMGIDTHGVRLLPLYLRELDE CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC GRSNPEPALRTVRRFQGTALVDADAAPGVVAGSHAARLASELARECGVGVVAVANSNHFG CCCCCCHHHHHHHHHCCCEEEECCCCCCCEECHHHHHHHHHHHHHCCCEEEEEECCCCCC AASVYGEWIAAQGLIGIVTTSAAARMAPFNATRAMFGTNPICFAAPARDGDLYLLDMATS HHHHHHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCEEEEECCHH QISYSQVKHFRRNGMALPSGWALGADGQPVTDPAQVVSLATLGGYKGQGLAMMVQILSCL HHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH LTAMPLDHALTHLDAEPYDRGREIGHCLIAIDPARFGSLDAFTAGVSSLMQAIRETPAAE HHHCCHHHHHHHCCCCHHHCCHHHCEEEEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC GERVQVAGDPQKAAIARRTAQGIPLDDDEWRGLQAEAERLGLGHLFSTDDMPHKETA CCEEEECCCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCCCCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 10850983 [H]