Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027563
Identifier: 238027563
GI number: 238027563
Start: 2167094
End: 2168020
Strand: Reverse
Name: 238027563
Synonym: bglu_1g19810
Alternate gene names: NA
Gene position: 2168020-2167094 (Counterclockwise)
Preceding gene: 238027564
Following gene: 238027562
Centisome position: 55.5
GC content: 73.03
Gene sequence:
>927_bases ATGGCCAACAATCTGACGAAGGTCCTCGCGGTGGCGCTGATCGCGATCGCAGTTTTGCTCGGCGCCTATGCCTGGATGCT GGGCAGCCGGCCGTCGTCCGTGCCGCGCGTGCAGGGCAGCCAGCCGGCGCAGGCGAAGCTGGTGCCGGTGGTGGTGGCCG TGCAGCCGCTGAAGGCGGGGCTGCCGATCGCGGCCAGCAGCCTGAGGGTCCAGCAGGCTGCGGCGCGGCCCGATGGCGCC TTCGTCGACCCGGTGCAGATCATCGGCCGGGTGCCGAGCGCCGACATTCCGGAGCAGGCCGCGGTGGTCGAGAGCTCGCT GTCCTCGGGCATGGCCGACCTGGTCAAGCCGGGCGAGCGCGCCGTCGCGATCAAGGTGGACGAGAACAACGCGGTCGGCA ACCACATGCGCCCCGGCAACTTCGTCGACGTGTTCGTCAACCTCAAACGCGACGCTGCGGGCGGCCTGCCCGGCACCAAT TCGAGCGGGCCGGAGATTCCGAAGACGCAGGCCAAGCTGCTGCTCTCGAAGATCCGGGTACTGGCGTTCGGCGACGCCAC CACCGCGCGCGACCCGTCCGGCGGCGCCGCGGGCGGGGTGCGCACTGCCGTGCTGGCGGTGCCGACCGCGCAGATCGACG CGCTGACGCTGGCCGAGGCGAGCGGCAACCTGACGCTCGCACTGCGCAGTCCGCGCGACGAGGACGTGGCGACGCAGACC GTCGCGATGCGCGTGGGCACGGCGGCCGATCCGTCGGCGCGCGCGGCGCAAGGCTTGTCGCTTGCCGAGCTGTCGCGCGG CGTGGCGGACGCGCCGGCCGCCGCCGCGCCGCGCCGGATGGCGCCGGCGCGCGTGATGACGCGCGCCGCGGACGGCGGCA GCATTGAAGTGATACGGGGTGGGCGCGCCGAATCGGTGGCCTATTGA
Upstream 100 bases:
>100_bases CATTGACAGCAGCGGCAGCGGGCGCAACCGGACTGGCCGGATACCAGCGGGGCAGGCGCGCAACGCCCGATTTCATGAAT CGCAGGTTCGCAGAACAACC
Downstream 100 bases:
>100_bases AACGAGCCGAGCACGGCAGCAGGCAGTCTTGCAACCGATACGGAGAGGTCCGGCTGCGGATCTCCGACACAATGAAAAAG AAACTGATTGCATTGGCCAT
Product: Flp pilus assembly CpaB
Products: NA
Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; CpaB Family Flp Pilus Assembly Protein; SAF Domain-Containing Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Pilus Assembly-Related Exported Protein; Signal Peptide Protein; Signal Peptide Protein CpaB Like; Flp Pilus Assembly Protein CpaB-Like Protein; Transmembrane Fimbriae Assembly Protein
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MANNLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPIAASSLRVQQAAARPDGA FVDPVQIIGRVPSADIPEQAAVVESSLSSGMADLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTN SSGPEIPKTQAKLLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPRDEDVATQT VAMRVGTAADPSARAAQGLSLAELSRGVADAPAAAAPRRMAPARVMTRAADGGSIEVIRGGRAESVAY
Sequences:
>Translated_308_residues MANNLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPIAASSLRVQQAAARPDGA FVDPVQIIGRVPSADIPEQAAVVESSLSSGMADLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTN SSGPEIPKTQAKLLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPRDEDVATQT VAMRVGTAADPSARAAQGLSLAELSRGVADAPAAAAPRRMAPARVMTRAADGGSIEVIRGGRAESVAY >Mature_307_residues ANNLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPIAASSLRVQQAAARPDGAF VDPVQIIGRVPSADIPEQAAVVESSLSSGMADLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNS SGPEIPKTQAKLLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPRDEDVATQTV AMRVGTAADPSARAAQGLSLAELSRGVADAPAAAAPRRMAPARVMTRAADGGSIEVIRGGRAESVAY
Specific function: Unknown
COG id: COG3745
COG function: function code U; Flp pilus assembly protein CpaB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31231; Mature: 31100
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCC LPIAASSLRVQQAAARPDGAFVDPVQIIGRVPSADIPEQAAVVESSLSSGMADLVKPGER CCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCE AVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQAKLLLSKIRV EEEEEECCCCCCCCCCCCCCEEEEEEEECHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPRDEDVATQT EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCHHHHHH VAMRVGTAADPSARAAQGLSLAELSRGVADAPAAAAPRRMAPARVMTRAADGGSIEVIRG HHHEECCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEC GRAESVAY CCCCCCCC >Mature Secondary Structure ANNLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCC LPIAASSLRVQQAAARPDGAFVDPVQIIGRVPSADIPEQAAVVESSLSSGMADLVKPGER CCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCE AVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQAKLLLSKIRV EEEEEECCCCCCCCCCCCCCEEEEEEEECHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPRDEDVATQT EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCHHHHHH VAMRVGTAADPSARAAQGLSLAELSRGVADAPAAAAPRRMAPARVMTRAADGGSIEVIRG HHHEECCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEC GRAESVAY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA