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The map label for this gene is hofQ [C]

Identifier: 238027562

GI number: 238027562

Start: 2165592

End: 2167022

Strand: Reverse

Name: hofQ [C]

Synonym: bglu_1g19800

Alternate gene names: 238027562

Gene position: 2167022-2165592 (Counterclockwise)

Preceding gene: 238027563

Following gene: 238027561

Centisome position: 55.47

GC content: 69.67

Gene sequence:

>1431_bases
ATGAAAAAGAAACTGATTGCATTGGCCATGGCAATGAGCGCAGTGATGGCGTCGGCCGTGGCAAACGCAGCCGGCCTGGA
CGCGGGCGTCGATCTGGCGGTCGGCGCGCAGCGGCAGATCGCGACCGGGCGCAGCCTGCAGCGGGTGGCGATCGGCGATC
CCGCGGTGGCCGACGTGCTGGTCGTCAAGGGCAATGGCGGCGGCGTGCTGCTGATCGGCAAGAGTGCCGGGACCACGAAC
GTGATGCTCTGGGAGCGAGGCCGTAGCGAACCGGATGTCTATCCGGTGCATGTGACGAGCGGCGCGGCCAAGGCGCTGCT
CGGCCCCGACACGCCGCGCGTGGACACGTATGGCGACACCACTGTGATCGCTGGCTCGGCAACCACGCTGGAGGCGCACC
AGCGCGCGGTGGACGTGGCCAATGCGGCGGCCGCGGCACGCGCGGCCGCGCAGGCCGGCGGCGGCGGCGCGGCCGCTGCG
GCGGGCGTGGGCGGCAAGACGGCAGGCGCGGGCGGCATGGGCGGTGCGGGCGGCGCTGCGCCGTCGGTGGTCGATGCCTC
GACCATCAGCGGCCGCAACGTGGTGCAGGTCGACGTGCGGGTGGTGGAGTTCAGCCGCTCGGCCGTCAAGCAGGCCGGCC
TGAATTTCTTCAAGAGCAGCAACGGTTTTGCGTTCGGCTCGTTTGCGCCCAGCTCGCTGAGCTCGCTCGGTTCGAGCGCG
ACCTCGGGGCTGGCGGTGACGGCCGCGCAGCCGATCGCCTCGGCGTTCAACCTGGTGGTGGGTTCGGCCTCGCGCGGCAT
CAGCAGCAACCTGTCGATTCTCGAGCAGAACAACCTCGCGCGGATCCTCGCGCAGCCGACGCTGGTCGCCCTGTCCGGGC
AAAGCGCGAACTTCCTGGCCGGCGGCGAGATCCCGGTGCCGGTGCCGCAGGCGCTCGGCACCGTCTCGATCGAATGGAAG
CCCTACGGCATCGGCCTGACGGTCGCGCCCACCGTGCTCGGCCCGAACCGCATCGCGCTGAAGGTCGCGCCCGAGGCGAG
CCAGCTCGATTTCGTCAACGCCATCACGATCAACGGCGTGACGGTGCCGGCGCTCACCACGCGCCGCGCCGACACCACGG
TCGAGCTCGGCGACGGCGAGAGCTACGTGATCGGCGGGCTGGTCGATCGCGAGACCACGTCGAATCTGAGCAAGGTGCCG
TTTCTCGGCGATCTGCCGATCATCGGCGCGTTTTTCAAGAGTCTGAGCTACCAGCAGAACGACAAGGAACTCGTGATCAT
CGTGACACCGCATCTGGTGTCGCCGATCGCGGCCGGTACCACGCTGCCCGCGGCGCCGGGCGAACTGTCCGAGCAGCGCG
ACGGACCGGTCTGGCGTTCGTTCCTCGGCGGCATGCTGGTGCCGGATGCGGCCCCGGGGTTCTCGAAATGA

Upstream 100 bases:

>100_bases
GTGGGCGCGCCGAATCGGTGGCCTATTGAAACGAGCCGAGCACGGCAGCAGGCAGTCTTGCAACCGATACGGAGAGGTCC
GGCTGCGGATCTCCGACACA

Downstream 100 bases:

>100_bases
GCGCGCCGGCGCAACCGAGCGTGCACGGGCGGCCCTGGCCGGCCCGTGCACGCGGCACAACGGGGAATGTTCAACATGAA
CGCGAGAACTCAATCATTGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MKKKLIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVLVVKGNGGGVLLIGKSAGTTN
VMLWERGRSEPDVYPVHVTSGAAKALLGPDTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAA
AGVGGKTAGAGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFAPSSLSSLGSSA
TSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLVALSGQSANFLAGGEIPVPVPQALGTVSIEWK
PYGIGLTVAPTVLGPNRIALKVAPEASQLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVP
FLGDLPIIGAFFKSLSYQQNDKELVIIVTPHLVSPIAAGTTLPAAPGELSEQRDGPVWRSFLGGMLVPDAAPGFSK

Sequences:

>Translated_476_residues
MKKKLIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVLVVKGNGGGVLLIGKSAGTTN
VMLWERGRSEPDVYPVHVTSGAAKALLGPDTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAA
AGVGGKTAGAGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFAPSSLSSLGSSA
TSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLVALSGQSANFLAGGEIPVPVPQALGTVSIEWK
PYGIGLTVAPTVLGPNRIALKVAPEASQLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVP
FLGDLPIIGAFFKSLSYQQNDKELVIIVTPHLVSPIAAGTTLPAAPGELSEQRDGPVWRSFLGGMLVPDAAPGFSK
>Mature_476_residues
MKKKLIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVLVVKGNGGGVLLIGKSAGTTN
VMLWERGRSEPDVYPVHVTSGAAKALLGPDTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAA
AGVGGKTAGAGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFAPSSLSSLGSSA
TSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLVALSGQSANFLAGGEIPVPVPQALGTVSIEWK
PYGIGLTVAPTVLGPNRIALKVAPEASQLDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVP
FLGDLPIIGAFFKSLSYQQNDKELVIIVTPHLVSPIAAGTTLPAAPGELSEQRDGPVWRSFLGGMLVPDAAPGFSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=242, Percent_Identity=30.5785123966942, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082242, Length=227, Percent_Identity=28.1938325991189, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 47595; Mature: 47595

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCEEEEECCCCCEEEEE
VVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAAKALLGPDTPRVDTYGDT
EEEECCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCE
TVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTAGAGGMGGAGGAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
PSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFAPSSLSSLGSSA
CCEEECCCCCCCCEEEEEEEEEEHHHHHHHHHCHHHEECCCCEEEECCCHHHHHHHCCCC
TSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLVALSGQSANFLA
CCCEEEEEHHHHHHHHHHEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCEEE
GGEIPVPVPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEASQLDFVNAITINGV
CCCCCCCCHHHCCEEEEEEEEEEECEEEECEEECCCEEEEEECCCCCCCEEEEEEEECCE
TVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPIIGAFFKSLSYQQN
EECCEEECCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
DKELVIIVTPHLVSPIAAGTTLPAAPGELSEQRDGPVWRSFLGGMLVPDAAPGFSK
CCEEEEEECCHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCEECCCCCCCCCC
>Mature Secondary Structure
MKKKLIALAMAMSAVMASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCEEEEECCCCCEEEEE
VVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAAKALLGPDTPRVDTYGDT
EEEECCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCE
TVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTAGAGGMGGAGGAA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
PSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFAPSSLSSLGSSA
CCEEECCCCCCCCEEEEEEEEEEHHHHHHHHHCHHHEECCCCEEEECCCHHHHHHHCCCC
TSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLVALSGQSANFLA
CCCEEEEEHHHHHHHHHHEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCEEE
GGEIPVPVPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEASQLDFVNAITINGV
CCCCCCCCHHHCCEEEEEEEEEEECEEEECEEECCCEEEEEECCCCCCCEEEEEEEECCE
TVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPIIGAFFKSLSYQQN
EECCEEECCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
DKELVIIVTPHLVSPIAAGTTLPAAPGELSEQRDGPVWRSFLGGMLVPDAAPGFSK
CCEEEEEECCHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]