| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is lon [H]
Identifier: 238026975
GI number: 238026975
Start: 1484003
End: 1486420
Strand: Direct
Name: lon [H]
Synonym: bglu_1g13520
Alternate gene names: 238026975
Gene position: 1484003-1486420 (Clockwise)
Preceding gene: 238026974
Following gene: 238026976
Centisome position: 37.99
GC content: 64.02
Gene sequence:
>2418_bases ATGTCAGGCACCCAACTTCTCCCGCCGGAACGCATTACGCTCCCGCTGCTGCCGCTGCGGGATGTCGTCGTTTTCCCGCA TATGGTGATCCCGCTCTTCGTGGGGCGGCCGAAATCGATCAAGGCCCTCGAGGCCGCGATGGAAGGCGGCAAGCACATCA TGCTGGTGGCGCAGAAGACCGCCGCGAAGGATGAGCCGACCGAGAAGGACATGTACGAGGTCGGCTGTATCGCCAACATC CTGCAGATGCTGAAGCTGCCGGACGGCACCGTGAAGGTGCTGGTCGAGGGCCTGCAGCGTGCCCAGGCGCTGTCGATCGA GGAGCAGGAAACCCAGTTCTCGTGCGAAGTGCTGCCGCTCGAACCCGATCATGCCGATAGCGCCGAAACGGAAGCGCTGC GGCGCGCCATCGTGTCGCAGTTCGATCAGTACGTGAAGCTGAACAAGAAGATCCCGCCGGAGATCCTGACCTCGCTGTCG GGCATCGACGAGGCCGGGCGTCTGGCCGACACGATCGCGGCGCACCTGCCGCTCAAGCTCGATCAGAAGCAGCACATCCT CGAGATGTTCCCCGTGATCGAGCGCCTCGAGCATCTGCTTGCGCAGCTCGAGGCCGAGATCGACATCCTGCAGGTGGAAA AGCGCATCCGCGGGCGCGTCAAGCGCCAGATGGAGAAGAGCCAGCGCGAGTACTATCTGAACGAACAGGTCAAGGCGATC CAGAAGGAACTGGGCGAGGGCGAGGAAGGCGCCGATCTCGAGGAACTCGAGAAGCGCATCAACGCCGCGCGCATGCCGAA GGAAGCCAAGAAGAAGGCCGACGCCGAGCTCAAGAAGCTCAAGCTGATGTCGCCGATGTCGGCCGAAGCCACCGTGGTGC GCAACTACATCGACACGCTGATCGGTCTGCCGTGGCGCAAGAAGAGCAAGGTCAACAACGATCTGTCGAACGCCGAGCAG GTGCTCGACGAGGACCACTACGGCCTCGAGAAGGTCAAGGAACGGATTCTCGAGTATCTCGCGGTGCAACAGCGAGTCGA CAAGGTCAAGGCGCCGATCCTGTGCCTCGTGGGGCCCCCGGGCGTCGGCAAGACCTCGCTCGGCCAGTCGATCGCGCGCG CGACGAACCGCAAGTTCGTGCGCATGGCGCTCGGCGGCGTGCGTGACGAGGCCGAGATCCGCGGCCATCGCCGCACCTAC ATCGGGTCGATGCCGGGCAAGATCCTGCAGAGCCTGACCAAGGTCGGCGTGCGCAATCCGCTCTTCCTGCTCGACGAAGT CGACAAGATGGGCATGGATTTCCGCGGCGATCCTTCGTCTGCGCTGCTCGAAGTCCTCGATCCGGAGCAGAACCATACGT TCGCCGATCACTACGTCGAGGTCGATTTCGATTTGTCCGACGTGATGTTCGTGGCCACCTCGAACTCGCTGAACATCCCG CCGCCGCTGCTCGACCGGATGGAAGTGATCCGCCTGTCCGGCTACACGGAGGACGAGAAGGTCAGCATCGCCCAGCGTTA TCTGCTGCCGAAGCAGAAGAAGAACAACGGGCTCAAGGACGGCGAGATCGCCGTGTCCGAAGAGGCGATCCGCGACATCA TCCGCTACTACACGCGGGAAGCCGGCGTGCGCTCGCTAGAGCGCGAAGTGTCGAAGATCTGCCGCAAGGTCGTGAAGATG CTGCTGCTGAAGAAGGCGGCCAGCCCGGTGAAGGTCGACGCGGGCAACCTCGACACCTTCCTCGGCGTGCGCAAGTACGA CTTCGGCCTCGCCGCGAAGGAGAATCAGGTCGGCCAGGTCACGGGTCTCGCCTGGACGGAAGTCGGCGGCGATCTGCTGA CCATCGAAGCCGCGGTGATGCCGGGCAAGGGCAACGTGATCCGCACCGGCTCGCTCGGCGACGTGATGAAGGAATCGGTC GAGGCCGCACGCTCGGTGGTGCGTTCGCGTTCGCGCCGTCTCGGTGTGAAGGACGAGGCGTTCGAGAAGCAGGACATCCA CATCCACGTGCCGGAAGGCGCGACGCCGAAGGACGGCCCGTCCGCCGGCATCGCGATGACGACGGCGCTGGTGTCGGTGC TGACCGGCATTCCGGTGCGTGCCGATGTCGCCATGACGGGCGAGATCACGCTGCGCGGCGAAGTGCTGCCGATCGGCGGG CTGAAGGAGAAGCTGCTCGCGGCGCATCGCGGCGGCATCAAGCTCGTGCTGATTCCGGAAGAGAACGTGAAGGATCTCGC CGACATTCCGGACAACGTGAAGAACGCGATCGAGATCGTGCCGGTCCGCTGGATCGACAAGGTTCTGGAGCTGGCGCTCG AACGCGTGCCCGACGTGTTGCCGGAAGAGGAAGCCAAGGCTGCGGCGCCGGTTGCCGAAGCCGCCAAGGACGCCTCGACG GAAGTCGTCAAGCACTGA
Upstream 100 bases:
>100_bases GCGAATTTTTTACCGGATATTTCCCACGCGCTGAAGGCTTGCATTCTACTGTGCCGGCCTCAATTACCGAACAATTGATT CCACTCATGGGGAAATGAAA
Downstream 100 bases:
>100_bases TCCGAACCCTTTTCGGCACCCAACCCGCGGCAGGTCCGCGGGTTTTTTATTTGTCGGCGTAGGATTTGGGCGAGCATTGC GTTGCCTCATTCGTATCACT
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 805; Mature: 804
Protein sequence:
>805_residues MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANI LQMLKLPDGTVKVLVEGLQRAQALSIEEQETQFSCEVLPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLS GIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQ VLDEDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTY IGSMPGKILQSLTKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIP PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIAVSEEAIRDIIRYYTREAGVRSLEREVSKICRKVVKM LLLKKAASPVKVDAGNLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESV EAARSVVRSRSRRLGVKDEAFEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERVPDVLPEEEAKAAAPVAEAAKDAST EVVKH
Sequences:
>Translated_805_residues MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANI LQMLKLPDGTVKVLVEGLQRAQALSIEEQETQFSCEVLPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLS GIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQ VLDEDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTY IGSMPGKILQSLTKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIP PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIAVSEEAIRDIIRYYTREAGVRSLEREVSKICRKVVKM LLLKKAASPVKVDAGNLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESV EAARSVVRSRSRRLGVKDEAFEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERVPDVLPEEEAKAAAPVAEAAKDAST EVVKH >Mature_804_residues SGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANIL QMLKLPDGTVKVLVEGLQRAQALSIEEQETQFSCEVLPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSG IDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ KELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQV LDEDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYI GSMPGKILQSLTKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIPP PLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIAVSEEAIRDIIRYYTREAGVRSLEREVSKICRKVVKML LLKKAASPVKVDAGNLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVE AARSVVRSRSRRLGVKDEAFEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGGL KEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERVPDVLPEEEAKAAAPVAEAAKDASTE VVKH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=564, Percent_Identity=46.9858156028369, Blast_Score=520, Evalue=1e-147, Organism=Homo sapiens, GI21396489, Length=683, Percent_Identity=40.99560761347, Blast_Score=506, Evalue=1e-143, Organism=Escherichia coli, GI1786643, Length=769, Percent_Identity=70.0910273081925, Blast_Score=1084, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=692, Percent_Identity=39.5953757225434, Blast_Score=478, Evalue=1e-135, Organism=Caenorhabditis elegans, GI17556486, Length=540, Percent_Identity=40.9259259259259, Blast_Score=436, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319449, Length=720, Percent_Identity=40.5555555555556, Blast_Score=515, Evalue=1e-147, Organism=Drosophila melanogaster, GI24666867, Length=704, Percent_Identity=41.6193181818182, Blast_Score=518, Evalue=1e-147, Organism=Drosophila melanogaster, GI221513036, Length=704, Percent_Identity=41.6193181818182, Blast_Score=517, Evalue=1e-146,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88999; Mature: 88868
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKT CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECC AAKDEPTEKDMYEVGCIANILQMLKLPDGTVKVLVEGLQRAQALSIEEQETQFSCEVLPL CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEC EPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSGIDEAGRLADTIAAHLPLKL CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC DQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTL HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGLPWRKKSKVNNDLSNAEQVLDEDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPP HCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLTKVGVRNP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCC LFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIP CHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEECCEEEEEECCCCEEEEEECCCCCCC PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIAVSEEAIRDIIRYYTRE CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCEEECHHHHHHHHHHHHHH AGVRSLEREVSKICRKVVKMLLLKKAASPVKVDAGNLDTFLGVRKYDFGLAAKENQVGQV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCHHHCCCCCCCCCCCCCE TGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVEAARSVVRSRSRRLGVKDEA ECEEHHHCCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHC FEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCC LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERVPDVL HHHHHHHHHCCCEEEEEECCCCHHHHHCCCHHHHHHHEEECHHHHHHHHHHHHHHCCCCC PEEEAKAAAPVAEAAKDASTEVVKH CCHHHHHHCHHHHHHHCCHHHHHCC >Mature Secondary Structure SGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKT CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECC AAKDEPTEKDMYEVGCIANILQMLKLPDGTVKVLVEGLQRAQALSIEEQETQFSCEVLPL CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEC EPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSGIDEAGRLADTIAAHLPLKL CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC DQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTL HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGLPWRKKSKVNNDLSNAEQVLDEDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPP HCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLTKVGVRNP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCC LFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYVEVDFDLSDVMFVATSNSLNIP CHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEECCEEEEEECCCCEEEEEECCCCCCC PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIAVSEEAIRDIIRYYTRE CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCEEECHHHHHHHHHHHHHH AGVRSLEREVSKICRKVVKMLLLKKAASPVKVDAGNLDTFLGVRKYDFGLAAKENQVGQV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHCCHHHCCCCCCCCCCCCCE TGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVEAARSVVRSRSRRLGVKDEA ECEEHHHCCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHC FEKQDIHIHVPEGATPKDGPSAGIAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCC LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERVPDVL HHHHHHHHHCCCEEEEEECCCCHHHHHCCCHHHHHHHEEECHHHHHHHHHHHHHHCCCCC PEEEAKAAAPVAEAAKDASTEVVKH CCHHHHHHCHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]