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The map label for this gene is yeaM [H]

Identifier: 238026870

GI number: 238026870

Start: 1354983

End: 1355882

Strand: Reverse

Name: yeaM [H]

Synonym: bglu_1g12380

Alternate gene names: 238026870

Gene position: 1355882-1354983 (Counterclockwise)

Preceding gene: 238026872

Following gene: 238026864

Centisome position: 34.71

GC content: 69.67

Gene sequence:

>900_bases
ATGCAACCGTCCGCCGCCACGTCGATCACCATCGACATTCCACCCGAGTTCTCGCCAACCCCCGAACACCCGCTGCGCGT
GCGCTCGCGGCCGATGGCGTCGCGCATGCGAATCCCCGAACACACGCACGCGTGGGGGCAGCTCGCCTATGCTTCGCGCG
GCGTGCTGCGCGTGGCAACGGCCGGCACGACCTGGATGGTGCCGCCCTCGCGCGCGATCTGGATTCCACCGCGCACCTCG
CACGAGCTCGTGGTAGTCGAGGATGCGTTTCTGCGCACGCTCTACATCGACGAATCGGCGATCCCGGGCGGCCTCGACGC
CTGCCGCGTGGTGGAAGTATCGGGCCTGCTGCGCGAGCTGATCGTGGCACTCGACGTGCGCACGCTCGCGCAGGCTCGAG
AACGGCTGCTCACGCCCCTGATCCTCGACGAACTCACGCGCAGCGAGCCACTGCCGCTCGCGGTGCCGATGCCGACCGAG
AAGCGCCTGCGCGCGCTCTGCGAGGCAGTGCTCGCGCACCCGGCGCAGGCCGAGTCGCTCGACCATTGGGCCGCCGCAGT
CGGCGCGAGCACGCGAACCATCGCGCGGCTATTTCGCCAGGAACTGGGAGTGAGCTTCACGCAATGGCAGCAGCAGGCAC
TGGTCGCGCGTGCGATTCCATTGCTCAATCAAGGACGGCCGATATCGCATGTCGCGCACGAACTCGGCTACCAGAGCCAG
AGTGCGTTCTCGGCGATGTTCCGGCGTGCGTTCGGCAAGAGCCCGCGCGCATTCATGCTCGGCGACGCCGGCGCCGCCAC
GGCCGATTCCGCCGAATCGACCGACCCCGCCCCGGGCGAGCCCACCGCCACCGCGACCACCGCCGGGCCGGCAGCAAGCG
ACGAAGCCGCCATGCGCTGA

Upstream 100 bases:

>100_bases
CGGCGCGCCCGCGCCGCTCATTATCGGAGCAAGCGGCCTCGGCGCATGCCAGCCGGCCGGCCGTCCTACAATACCGGTTC
GTCCAGCCGCGCTGCTCACG

Downstream 100 bases:

>100_bases
GTCCGTGGACATGACGCCTGTCGCGTCACCCTACCGGCCGCGCCATGTAGCGGATCGAGCCCAACTGGGCGAGCCGCGGC
CCGGCGAGCCGGTAGCCGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MQPSAATSITIDIPPEFSPTPEHPLRVRSRPMASRMRIPEHTHAWGQLAYASRGVLRVATAGTTWMVPPSRAIWIPPRTS
HELVVVEDAFLRTLYIDESAIPGGLDACRVVEVSGLLRELIVALDVRTLAQARERLLTPLILDELTRSEPLPLAVPMPTE
KRLRALCEAVLAHPAQAESLDHWAAAVGASTRTIARLFRQELGVSFTQWQQQALVARAIPLLNQGRPISHVAHELGYQSQ
SAFSAMFRRAFGKSPRAFMLGDAGAATADSAESTDPAPGEPTATATTAGPAASDEAAMR

Sequences:

>Translated_299_residues
MQPSAATSITIDIPPEFSPTPEHPLRVRSRPMASRMRIPEHTHAWGQLAYASRGVLRVATAGTTWMVPPSRAIWIPPRTS
HELVVVEDAFLRTLYIDESAIPGGLDACRVVEVSGLLRELIVALDVRTLAQARERLLTPLILDELTRSEPLPLAVPMPTE
KRLRALCEAVLAHPAQAESLDHWAAAVGASTRTIARLFRQELGVSFTQWQQQALVARAIPLLNQGRPISHVAHELGYQSQ
SAFSAMFRRAFGKSPRAFMLGDAGAATADSAESTDPAPGEPTATATTAGPAASDEAAMR
>Mature_299_residues
MQPSAATSITIDIPPEFSPTPEHPLRVRSRPMASRMRIPEHTHAWGQLAYASRGVLRVATAGTTWMVPPSRAIWIPPRTS
HELVVVEDAFLRTLYIDESAIPGGLDACRVVEVSGLLRELIVALDVRTLAQARERLLTPLILDELTRSEPLPLAVPMPTE
KRLRALCEAVLAHPAQAESLDHWAAAVGASTRTIARLFRQELGVSFTQWQQQALVARAIPLLNQGRPISHVAHELGYQSQ
SAFSAMFRRAFGKSPRAFMLGDAGAATADSAESTDPAPGEPTATATTAGPAASDEAAMR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=243, Percent_Identity=34.5679012345679, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32325; Mature: 32325

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSAATSITIDIPPEFSPTPEHPLRVRSRPMASRMRIPEHTHAWGQLAYASRGVLRVAT
CCCCCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
AGTTWMVPPSRAIWIPPRTSHELVVVEDAFLRTLYIDESAIPGGLDACRVVEVSGLLREL
CCCEEECCCCCEEEECCCCCCCEEEEEHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
IVALDVRTLAQARERLLTPLILDELTRSEPLPLAVPMPTEKRLRALCEAVLAHPAQAESL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCHHHH
DHWAAAVGASTRTIARLFRQELGVSFTQWQQQALVARAIPLLNQGRPISHVAHELGYQSQ
HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCH
SAFSAMFRRAFGKSPRAFMLGDAGAATADSAESTDPAPGEPTATATTAGPAASDEAAMR
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MQPSAATSITIDIPPEFSPTPEHPLRVRSRPMASRMRIPEHTHAWGQLAYASRGVLRVAT
CCCCCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
AGTTWMVPPSRAIWIPPRTSHELVVVEDAFLRTLYIDESAIPGGLDACRVVEVSGLLREL
CCCEEECCCCCEEEECCCCCCCEEEEEHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
IVALDVRTLAQARERLLTPLILDELTRSEPLPLAVPMPTEKRLRALCEAVLAHPAQAESL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCHHHH
DHWAAAVGASTRTIARLFRQELGVSFTQWQQQALVARAIPLLNQGRPISHVAHELGYQSQ
HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCH
SAFSAMFRRAFGKSPRAFMLGDAGAATADSAESTDPAPGEPTATATTAGPAASDEAAMR
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]