Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is yejE [H]
Identifier: 238026861
GI number: 238026861
Start: 1340985
End: 1342082
Strand: Direct
Name: yejE [H]
Synonym: bglu_1g12290
Alternate gene names: 238026861
Gene position: 1340985-1342082 (Clockwise)
Preceding gene: 238026860
Following gene: 238026862
Centisome position: 34.33
GC content: 68.31
Gene sequence:
>1098_bases GTGAGCCGAGCCGCCGTTTCCTCCCGGATCGACGCCGCCCGCGCGCGCGTCTCGCCATCGCCCGCGCGCCGCGTCTGGCG GCGTTTTCGCGGCCAGCGCCTCGGCTACTGGAGCTTCGTGGTGTTCGTGGTGGCATTCGCCGTCGCGCTGGCCGCGCCGC TCTGGTCGAACGACCGGCCGCTGGTGGTGCGCTACGACGGGCACTATTATTTCCCGATCGTGAAGGACTACGCCGAGACC ACCTTCGGCGGGGACTTCCCGACCCCGGCCGATTATCTCGACCCTTATGTGCGCGGCAAGCTCGAGGCGCCCGGCAACTT CGTGCTGTATCCGCCGAACCATTATTCGGCCACCACGCTCAACTATTTCTCGGCGCTGCCGAACCCGGCGCCGCCGTCGC GCGATAACTGGCTCGGCACCGACGCGCAGGGCCGCGACCTGCTCGCGCGGCTGGTGTACGGCTTCGCCGTGTCGGTGGAG TTCGCGCTGGTGCTGACGCTGATCGGCACCGTCCTCGGCATCGCGGCCGGCGCCGTGCAAGGCTTCTACGGCGGGCGCAT CGACATCGTCGGGCAGCGTCTGATCGAGATCTGGAGCTCGATGCCCGAGCTCTACCTGCTGATCATCTTCGCGTCGATCT TCGAGCCGAGCTTCTTGCTGCTGATCGTGCTGCTGTCGCTGTTCGGCTGGGTCGGCCTTGCCGACTACGTGCGCGCCGAG TTCCTGCGCAACCGCACCCAGGACTACGTGCGTGCCGCGCGCGCGATCGGCCTCACCAACTGGCAGATCATCTGGCGCCA CGTGCTGCCCAACAGCCTCACGCCCGTGATCACGTTCCTGCCGTTTCGCATGAGCGGCTCGATCCTCGCGCTGACCAGCC TCGACTTCCTCGGGCTCGGCGTGCCGCCGCCCACGCCGAGCCTCGGCGAACTGCTCGCGCAGGGCAAGGCGAACCTCGAC GCCTGGTGGATCTCGCTTGCGACCTTCGCGGTGCTGGTGTTCACGCTGCTGCTGCTGACCTTCATGGGCGACGCGCTGCG CAATGCGCTCGACTCGCGCATCGCCGATACCTCGCGCGCGGCGGGAGGCGTGCGATGA
Upstream 100 bases:
>100_bases TACCTGTTCACGCTGATCGGCCTCGTCACGAAGCTGGTCTCCGACCTCTGCTACGTCTGGGTCGACCCGCGAATTCAATT CGACCAACTGGAGCGCTGAC
Downstream 100 bases:
>100_bases CGCGGCCGTCGAAGCCATCGGCCAAGCCGCCGCGCAAGGTGGGCCGCGCCCCGGACGACGCGCCGCCGACCGCGGCACCG ACGCCGGACGCGGTGTCCGG
Product: putative ABBC transport system, membrane protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MSRAAVSSRIDAARARVSPSPARRVWRRFRGQRLGYWSFVVFVVAFAVALAAPLWSNDRPLVVRYDGHYYFPIVKDYAET TFGGDFPTPADYLDPYVRGKLEAPGNFVLYPPNHYSATTLNYFSALPNPAPPSRDNWLGTDAQGRDLLARLVYGFAVSVE FALVLTLIGTVLGIAAGAVQGFYGGRIDIVGQRLIEIWSSMPELYLLIIFASIFEPSFLLLIVLLSLFGWVGLADYVRAE FLRNRTQDYVRAARAIGLTNWQIIWRHVLPNSLTPVITFLPFRMSGSILALTSLDFLGLGVPPPTPSLGELLAQGKANLD AWWISLATFAVLVFTLLLLTFMGDALRNALDSRIADTSRAAGGVR
Sequences:
>Translated_365_residues MSRAAVSSRIDAARARVSPSPARRVWRRFRGQRLGYWSFVVFVVAFAVALAAPLWSNDRPLVVRYDGHYYFPIVKDYAET TFGGDFPTPADYLDPYVRGKLEAPGNFVLYPPNHYSATTLNYFSALPNPAPPSRDNWLGTDAQGRDLLARLVYGFAVSVE FALVLTLIGTVLGIAAGAVQGFYGGRIDIVGQRLIEIWSSMPELYLLIIFASIFEPSFLLLIVLLSLFGWVGLADYVRAE FLRNRTQDYVRAARAIGLTNWQIIWRHVLPNSLTPVITFLPFRMSGSILALTSLDFLGLGVPPPTPSLGELLAQGKANLD AWWISLATFAVLVFTLLLLTFMGDALRNALDSRIADTSRAAGGVR >Mature_364_residues SRAAVSSRIDAARARVSPSPARRVWRRFRGQRLGYWSFVVFVVAFAVALAAPLWSNDRPLVVRYDGHYYFPIVKDYAETT FGGDFPTPADYLDPYVRGKLEAPGNFVLYPPNHYSATTLNYFSALPNPAPPSRDNWLGTDAQGRDLLARLVYGFAVSVEF ALVLTLIGTVLGIAAGAVQGFYGGRIDIVGQRLIEIWSSMPELYLLIIFASIFEPSFLLLIVLLSLFGWVGLADYVRAEF LRNRTQDYVRAARAIGLTNWQIIWRHVLPNSLTPVITFLPFRMSGSILALTSLDFLGLGVPPPTPSLGELLAQGKANLDA WWISLATFAVLVFTLLLLTFMGDALRNALDSRIADTSRAAGGVR
Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4239
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788505, Length=341, Percent_Identity=50.733137829912, Blast_Score=355, Evalue=2e-99, Organism=Escherichia coli, GI1787054, Length=239, Percent_Identity=30.5439330543933, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787760, Length=227, Percent_Identity=33.920704845815, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI1787498, Length=231, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI1789964, Length=235, Percent_Identity=33.1914893617021, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787549, Length=217, Percent_Identity=30.8755760368664, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1789889, Length=229, Percent_Identity=27.0742358078603, Blast_Score=81, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 40354; Mature: 40223
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAAVSSRIDAARARVSPSPARRVWRRFRGQRLGYWSFVVFVVAFAVALAAPLWSNDRP CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC LVVRYDGHYYFPIVKDYAETTFGGDFPTPADYLDPYVRGKLEAPGNFVLYPPNHYSATTL EEEEECCEEEEHHHHHHHHHCCCCCCCCCHHHHCHHHCCCCCCCCCEEEECCCCCCHHHH NYFSALPNPAPPSRDNWLGTDAQGRDLLARLVYGFAVSVEFALVLTLIGTVLGIAAGAVQ HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFYGGRIDIVGQRLIEIWSSMPELYLLIIFASIFEPSFLLLIVLLSLFGWVGLADYVRAE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH FLRNRTQDYVRAARAIGLTNWQIIWRHVLPNSLTPVITFLPFRMSGSILALTSLDFLGLG HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEHHHHHCCC VPPPTPSLGELLAQGKANLDAWWISLATFAVLVFTLLLLTFMGDALRNALDSRIADTSRA CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGGVR CCCCC >Mature Secondary Structure SRAAVSSRIDAARARVSPSPARRVWRRFRGQRLGYWSFVVFVVAFAVALAAPLWSNDRP CCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC LVVRYDGHYYFPIVKDYAETTFGGDFPTPADYLDPYVRGKLEAPGNFVLYPPNHYSATTL EEEEECCEEEEHHHHHHHHHCCCCCCCCCHHHHCHHHCCCCCCCCCEEEECCCCCCHHHH NYFSALPNPAPPSRDNWLGTDAQGRDLLARLVYGFAVSVEFALVLTLIGTVLGIAAGAVQ HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFYGGRIDIVGQRLIEIWSSMPELYLLIIFASIFEPSFLLLIVLLSLFGWVGLADYVRAE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH FLRNRTQDYVRAARAIGLTNWQIIWRHVLPNSLTPVITFLPFRMSGSILALTSLDFLGLG HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEHHHHHCCC VPPPTPSLGELLAQGKANLDAWWISLATFAVLVFTLLLLTFMGDALRNALDSRIADTSRA CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGGVR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]