| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026821
Identifier: 238026821
GI number: 238026821
Start: 1297207
End: 1298640
Strand: Direct
Name: 238026821
Synonym: bglu_1g11800
Alternate gene names: NA
Gene position: 1297207-1298640 (Clockwise)
Preceding gene: 238026820
Following gene: 238026822
Centisome position: 33.21
GC content: 51.74
Gene sequence:
>1434_bases ATGCTGACTCGTTTGAAAGTTGTCGGGTTCAAGAATCTTCGGAAGATCGACATTCAGTTCGGTCTGTTCACTTGCATTGC CGGTGCCAATGGTGTGGGGAAATCGAATCTGTTCGATGCAATCACTTTCTTGTGCGATTTGGCATCCATGCCGATTCTCA AGGCATGCAGCAATGTGCGCGGTACACATGGCCGGGCGTCAGAATTCGAGTCACTGTTTTTCCATGAAAAGGGGGAGAAG GAACTCCGAATGGAATTTCTTGCGGAGATGATTGTCCCAAATGACGTTGTCGATGATTTCGACCGCAATGTCAAGCCTAC GGCGACCTTGCTTGAATATTCCTTGGTGCTTCGTCTTAATACTGAAGCGACACTTGGCTCTTCAAAAGATCCGATCCACA TCGAACGCGAAGAATTACGTGCGAAGCCGTCCAGTGAAGCGCAGAAATTCCTTTCGTTCAGCGTCGGTGCTGATCTCGCT AAAAATAAAAAGCTGATCTTTGGACCTGGGCCACGTACATCTCCATTCATCGAAACCGATAGCAAGGATTTGGACATCAC AATCTTGCTGCGCAGCGACCGTAGCGGCGGGCAGCCTCAGAAGATATCTGCCCGCAAGAGTCCGCAAACTATTCTTTCCG GCGTTAATCTGTCATCGCACCCGACGGCCTTGGCTGCCCGCAGAGAAATGCAATCGTGGCGTATGTTGCAATTGGAGCCT TCGGCATTGCGCGCGCCGGACGATGTGTTTGACGACGCCTCGCTTTCTCCCACGGGGAAGCATATGCCCAATACTTTGTT CCGTTTGGGTAGATACAGCGATATTGCGAATCGATTGGCTGATTTGATCCCCGGAGTGACTGCCTTGGATGTAGATACCG ATGAGACGAGGCAGCAGCGCACACTATTGGTGAAGATGAGCGATGGTCGTTCGTATCCCGCGAGTTCATTGTCGGATGGC ACGCTCCGGTTCCTCGTACTTGCGGTGCTGGCTAGCGATCCAGATGCCAAAGGACTGGTGTGCTTGGAAGAACCTGAGAA CGGCATCCATCCTTTGCGAATTCCTGAGATGCTTCGCTTGGTCAGGGAACTTTCCGATGCCGACTTGTCGGGAGAGGAGC TTGCCGTTCAGCATTCGTTGCGACAGGTCATCATAAATACACATTCGCCGCTGGTCGTAGCTGAGCTTTTAGACGACGAA TTGCTCTTTGCTGAATCTTTGCGCCTGCGTGGTGCCTCGTTTGCAAACTTTAAGCCTATTGGCGGGACTTGGCGCGCGCG AGCGCCAAACGCGTCCGATTCAGGATTTATCACACGAGGTGAGTTGCATGCCTATCTCTCTGGCATGAGAGCGAGGTCAA GGAGCAATGGTCCTAAACACGTTGTGGACCATTTGCCGCCGATTGAGACACTGGATCTTTTTCGAAGTGCCTAA
Upstream 100 bases:
>100_bases TCACTAGGGCTGCCTACCGGTGGAATTTTGTTAGAAGCTGTCACGGACTACTTCGGTGGTCACGTCAGCTCATCGCCCTG CAAATCGGCCAAGGAACATC
Downstream 100 bases:
>100_bases TCGCGTGGCCTATATATGAAAACTCTGACAGTAACGCTACTTACTGATGGCACATCGGATCGGACTCTGCTGCCTATTGT CCAGTTTCTCTTGGACGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: SMC Domain-Containing Protein; RecF/RecN/SMC N Terminal Domain; SMC Domain Protein; ATPase
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MLTRLKVVGFKNLRKIDIQFGLFTCIAGANGVGKSNLFDAITFLCDLASMPILKACSNVRGTHGRASEFESLFFHEKGEK ELRMEFLAEMIVPNDVVDDFDRNVKPTATLLEYSLVLRLNTEATLGSSKDPIHIEREELRAKPSSEAQKFLSFSVGADLA KNKKLIFGPGPRTSPFIETDSKDLDITILLRSDRSGGQPQKISARKSPQTILSGVNLSSHPTALAARREMQSWRMLQLEP SALRAPDDVFDDASLSPTGKHMPNTLFRLGRYSDIANRLADLIPGVTALDVDTDETRQQRTLLVKMSDGRSYPASSLSDG TLRFLVLAVLASDPDAKGLVCLEEPENGIHPLRIPEMLRLVRELSDADLSGEELAVQHSLRQVIINTHSPLVVAELLDDE LLFAESLRLRGASFANFKPIGGTWRARAPNASDSGFITRGELHAYLSGMRARSRSNGPKHVVDHLPPIETLDLFRSA
Sequences:
>Translated_477_residues MLTRLKVVGFKNLRKIDIQFGLFTCIAGANGVGKSNLFDAITFLCDLASMPILKACSNVRGTHGRASEFESLFFHEKGEK ELRMEFLAEMIVPNDVVDDFDRNVKPTATLLEYSLVLRLNTEATLGSSKDPIHIEREELRAKPSSEAQKFLSFSVGADLA KNKKLIFGPGPRTSPFIETDSKDLDITILLRSDRSGGQPQKISARKSPQTILSGVNLSSHPTALAARREMQSWRMLQLEP SALRAPDDVFDDASLSPTGKHMPNTLFRLGRYSDIANRLADLIPGVTALDVDTDETRQQRTLLVKMSDGRSYPASSLSDG TLRFLVLAVLASDPDAKGLVCLEEPENGIHPLRIPEMLRLVRELSDADLSGEELAVQHSLRQVIINTHSPLVVAELLDDE LLFAESLRLRGASFANFKPIGGTWRARAPNASDSGFITRGELHAYLSGMRARSRSNGPKHVVDHLPPIETLDLFRSA >Mature_477_residues MLTRLKVVGFKNLRKIDIQFGLFTCIAGANGVGKSNLFDAITFLCDLASMPILKACSNVRGTHGRASEFESLFFHEKGEK ELRMEFLAEMIVPNDVVDDFDRNVKPTATLLEYSLVLRLNTEATLGSSKDPIHIEREELRAKPSSEAQKFLSFSVGADLA KNKKLIFGPGPRTSPFIETDSKDLDITILLRSDRSGGQPQKISARKSPQTILSGVNLSSHPTALAARREMQSWRMLQLEP SALRAPDDVFDDASLSPTGKHMPNTLFRLGRYSDIANRLADLIPGVTALDVDTDETRQQRTLLVKMSDGRSYPASSLSDG TLRFLVLAVLASDPDAKGLVCLEEPENGIHPLRIPEMLRLVRELSDADLSGEELAVQHSLRQVIINTHSPLVVAELLDDE LLFAESLRLRGASFANFKPIGGTWRARAPNASDSGFITRGELHAYLSGMRARSRSNGPKHVVDHLPPIETLDLFRSA
Specific function: Unknown
COG id: COG4637
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52578; Mature: 52578
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRLKVVGFKNLRKIDIQFGLFTCIAGANGVGKSNLFDAITFLCDLASMPILKACSNVR CCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCC GTHGRASEFESLFFHEKGEKELRMEFLAEMIVPNDVVDDFDRNVKPTATLLEYSLVLRLN CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHEEEEEEEEC TEATLGSSKDPIHIEREELRAKPSSEAQKFLSFSVGADLAKNKKLIFGPGPRTSPFIETD CCCCCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCHHCCCEEEECCCCCCCCCEECC SKDLDITILLRSDRSGGQPQKISARKSPQTILSGVNLSSHPTALAARREMQSWRMLQLEP CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECC SALRAPDDVFDDASLSPTGKHMPNTLFRLGRYSDIANRLADLIPGVTALDVDTDETRQQR HHHCCCHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHCCE TLLVKMSDGRSYPASSLSDGTLRFLVLAVLASDPDAKGLVCLEEPENGIHPLRIPEMLRL EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH VRELSDADLSGEELAVQHSLRQVIINTHSPLVVAELLDDELLFAESLRLRGASFANFKPI HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHCCCCCCCCCCC GGTWRARAPNASDSGFITRGELHAYLSGMRARSRSNGPKHVVDHLPPIETLDLFRSA CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure MLTRLKVVGFKNLRKIDIQFGLFTCIAGANGVGKSNLFDAITFLCDLASMPILKACSNVR CCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCC GTHGRASEFESLFFHEKGEKELRMEFLAEMIVPNDVVDDFDRNVKPTATLLEYSLVLRLN CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHEEEEEEEEC TEATLGSSKDPIHIEREELRAKPSSEAQKFLSFSVGADLAKNKKLIFGPGPRTSPFIETD CCCCCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCHHCCCEEEECCCCCCCCCEECC SKDLDITILLRSDRSGGQPQKISARKSPQTILSGVNLSSHPTALAARREMQSWRMLQLEP CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECC SALRAPDDVFDDASLSPTGKHMPNTLFRLGRYSDIANRLADLIPGVTALDVDTDETRQQR HHHCCCHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHCCE TLLVKMSDGRSYPASSLSDGTLRFLVLAVLASDPDAKGLVCLEEPENGIHPLRIPEMLRL EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH VRELSDADLSGEELAVQHSLRQVIINTHSPLVVAELLDDELLFAESLRLRGASFANFKPI HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHCCCCCCCCCCC GGTWRARAPNASDSGFITRGELHAYLSGMRARSRSNGPKHVVDHLPPIETLDLFRSA CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA