| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yugH [H]
Identifier: 238026683
GI number: 238026683
Start: 1133100
End: 1134755
Strand: Direct
Name: yugH [H]
Synonym: bglu_1g10380
Alternate gene names: 238026683
Gene position: 1133100-1134755 (Clockwise)
Preceding gene: 238026682
Following gene: 238026689
Centisome position: 29.01
GC content: 63.77
Gene sequence:
>1656_bases ATGACCAAGAACGACCAAAACCTGAACGAGCGGGCAAAACTCGCCGCCCTCAGCCCCTTCGAACTGAAGGACGAGCTGAT CAGGGTTGCCGGCGAGGGCGTGGTCGAACGCCCCGCCAACGTCTCGATGCTGAACGCCGGCCGCGGCAATCCCAACTTCC TCGCCACCATCCCGCGCCACGGCTTCTGGCAGCTCGGCCTGTTCGCGATGCGCGAGGCGGAGCGCTCGTTCGCCTACATG CCCGAGGGGCTCGGCGGCATGCCCAAGCGCGACGGCATCGTCGAGCGTTTCGACCTGTTCCTGCGCGAGAACCACGGCTG CCCCGGCATCGATTTCCTGCATGGCGCGGTGTCCTACGTGCGCGACCAGCTCGGCCTGTCCGACGCCGATTTCCTCTATG AAATGTGCGAAGGCATCCTGGGCGCGAACTATCCGGTGCCCGACCGGATGCTGAAGCTCTCGGAGGTGATCGTCGGGCAG TACCTGCGCCGCGAGATGATCGGCAAGCATCCTTTCGTCGGCGAATTCGACGTGTTCGCCACCGAAGGCGGCACGGCGGC GATGACGTACATCTTCAACACGATGCGCGAGAACCATCTGATCAAGCCGGGCGACATCATCGCGCTGGGCATGCCGATCT TCACGCCCTACATCGAGATTCCGAAGCTCAACGACTACCAGCTCGATGTCGTGCATCTGAACGCGACGGTCGAGAGCAAC TGGCAATACTCGAAGGACGAGCTCGACAAGCTGCGCGATCCGAAGATCAAGGCGTTCTTCCTCGTCAACCCGAGCAATCC GCCGTCGGTGCGCCTGAGCGACGAGAGCCTCGAGTACATCGCCGAAATCGTCAAGGATCGCCCCGACCTGGTGCTGCTGA CCGACGACGTGTACGGCACGTTCGCCGACGATTTCGTCTCGCTGTTCGCGCTCGCACCGCACAACACGATCCTCGTCTAC TCGTATTCGAAGTACTTCGGCGCGACCGGCTGGCGCCTCGGCACCATCGCCACCCATCGCGACAACGTGCTGGATCGCCA GATTGCCGAGCTGACCGAGGAACAGAAGCAGGGCCTGCGCGAGCGCTACGAGTCGATCACGACCGACCCGGATTCGCTGA AGTTCATCGACCGGCTGGTGGCCGACAGCCGTACCGTCGCGCTGAATCACACGGCCGGCCTGGCCACGCCGCAGCAGGTG CAGATGGTGCTGTTCTCGCTGTTCTCGCTGATGGATACGCCGGACGCATACAAGAACGCGCTCAAGCGCCTGATCCGCAG CCGCAAGCGCGCGCTGTACGAGGAAGTGGGCATCGCGTTCGACGACAGCGATCCGAACCAGGTCGACTACTACACGATCC TCGACCTCGAATTCCTCGGCGAGCGCGAATACGGCCGCGAGTTCGTGGACTGGCTGCTCAAGAGAGCCGAGCCGTCGGAC CTGTTGTTCCGCCTCGCCCGCGAGGCGCGCGTGGTGCTGCTGCCGGGCCGCGGCTTCGGCACGCCGCATCCGTCGGGCCG CGTGTCACTGGCCAACCTCAACGAGTCCGACTATCGCAAGATCGGCCGAGCGCTGCGCAAGCTGATCGAGGACTATGTCA GCCAGTACGAGAAGGAAACCGGCAAGAAGATCCGCGATCGCGCGAGCGCGAGGTAA
Upstream 100 bases:
>100_bases GCCGTCCGCGCGGGCCGGCTTGCCCGCACCCCGGATTCGACACGCCGTGGCGGACACCCCGCCCCGGCACTCTTAACTGT TCTTATCGGAGAATGGAAAC
Downstream 100 bases:
>100_bases CGCCGCCTGCCGCCCGGGTCGGGCGGCGGCGCGCAACGTCCCGGGCGGCAGGCGGCCGCAAGTCATGCGCTGGCCCCGGC CGCCCGCTCGCGCCCGAGGG
Product: aspartate aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 551; Mature: 550
Protein sequence:
>551_residues MTKNDQNLNERAKLAALSPFELKDELIRVAGEGVVERPANVSMLNAGRGNPNFLATIPRHGFWQLGLFAMREAERSFAYM PEGLGGMPKRDGIVERFDLFLRENHGCPGIDFLHGAVSYVRDQLGLSDADFLYEMCEGILGANYPVPDRMLKLSEVIVGQ YLRREMIGKHPFVGEFDVFATEGGTAAMTYIFNTMRENHLIKPGDIIALGMPIFTPYIEIPKLNDYQLDVVHLNATVESN WQYSKDELDKLRDPKIKAFFLVNPSNPPSVRLSDESLEYIAEIVKDRPDLVLLTDDVYGTFADDFVSLFALAPHNTILVY SYSKYFGATGWRLGTIATHRDNVLDRQIAELTEEQKQGLRERYESITTDPDSLKFIDRLVADSRTVALNHTAGLATPQQV QMVLFSLFSLMDTPDAYKNALKRLIRSRKRALYEEVGIAFDDSDPNQVDYYTILDLEFLGEREYGREFVDWLLKRAEPSD LLFRLAREARVVLLPGRGFGTPHPSGRVSLANLNESDYRKIGRALRKLIEDYVSQYEKETGKKIRDRASAR
Sequences:
>Translated_551_residues MTKNDQNLNERAKLAALSPFELKDELIRVAGEGVVERPANVSMLNAGRGNPNFLATIPRHGFWQLGLFAMREAERSFAYM PEGLGGMPKRDGIVERFDLFLRENHGCPGIDFLHGAVSYVRDQLGLSDADFLYEMCEGILGANYPVPDRMLKLSEVIVGQ YLRREMIGKHPFVGEFDVFATEGGTAAMTYIFNTMRENHLIKPGDIIALGMPIFTPYIEIPKLNDYQLDVVHLNATVESN WQYSKDELDKLRDPKIKAFFLVNPSNPPSVRLSDESLEYIAEIVKDRPDLVLLTDDVYGTFADDFVSLFALAPHNTILVY SYSKYFGATGWRLGTIATHRDNVLDRQIAELTEEQKQGLRERYESITTDPDSLKFIDRLVADSRTVALNHTAGLATPQQV QMVLFSLFSLMDTPDAYKNALKRLIRSRKRALYEEVGIAFDDSDPNQVDYYTILDLEFLGEREYGREFVDWLLKRAEPSD LLFRLAREARVVLLPGRGFGTPHPSGRVSLANLNESDYRKIGRALRKLIEDYVSQYEKETGKKIRDRASAR >Mature_550_residues TKNDQNLNERAKLAALSPFELKDELIRVAGEGVVERPANVSMLNAGRGNPNFLATIPRHGFWQLGLFAMREAERSFAYMP EGLGGMPKRDGIVERFDLFLRENHGCPGIDFLHGAVSYVRDQLGLSDADFLYEMCEGILGANYPVPDRMLKLSEVIVGQY LRREMIGKHPFVGEFDVFATEGGTAAMTYIFNTMRENHLIKPGDIIALGMPIFTPYIEIPKLNDYQLDVVHLNATVESNW QYSKDELDKLRDPKIKAFFLVNPSNPPSVRLSDESLEYIAEIVKDRPDLVLLTDDVYGTFADDFVSLFALAPHNTILVYS YSKYFGATGWRLGTIATHRDNVLDRQIAELTEEQKQGLRERYESITTDPDSLKFIDRLVADSRTVALNHTAGLATPQQVQ MVLFSLFSLMDTPDAYKNALKRLIRSRKRALYEEVGIAFDDSDPNQVDYYTILDLEFLGEREYGREFVDWLLKRAEPSDL LFRLAREARVVLLPGRGFGTPHPSGRVSLANLNESDYRKIGRALRKLIEDYVSQYEKETGKKIRDRASAR
Specific function: Unknown
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001176 - InterPro: IPR004839 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: NA
Molecular weight: Translated: 62590; Mature: 62459
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKNDQNLNERAKLAALSPFELKDELIRVAGEGVVERPANVSMLNAGRGNPNFLATIPRH CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCEEEECCCC GFWQLGLFAMREAERSFAYMPEGLGGMPKRDGIVERFDLFLRENHGCPGIDFLHGAVSYV CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH RDQLGLSDADFLYEMCEGILGANYPVPDRMLKLSEVIVGQYLRREMIGKHPFVGEFDVFA HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TEGGTAAMTYIFNTMRENHLIKPGDIIALGMPIFTPYIEIPKLNDYQLDVVHLNATVESN ECCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCEECCCCCCCEEEEEEEEEEECCC WQYSKDELDKLRDPKIKAFFLVNPSNPPSVRLSDESLEYIAEIVKDRPDLVLLTDDVYGT CCCCHHHHHHHCCCCEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCHH FADDFVSLFALAPHNTILVYSYSKYFGATGWRLGTIATHRDNVLDRQIAELTEEQKQGLR HHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH ERYESITTDPDSLKFIDRLVADSRTVALNHTAGLATPQQVQMVLFSLFSLMDTPDAYKNA HHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH LKRLIRSRKRALYEEVGIAFDDSDPNQVDYYTILDLEFLGEREYGREFVDWLLKRAEPSD HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHCCCHHH LLFRLAREARVVLLPGRGFGTPHPSGRVSLANLNESDYRKIGRALRKLIEDYVSQYEKET HHHHHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH GKKIRDRASAR HHHHHHHCCCC >Mature Secondary Structure TKNDQNLNERAKLAALSPFELKDELIRVAGEGVVERPANVSMLNAGRGNPNFLATIPRH CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCEEEECCCC GFWQLGLFAMREAERSFAYMPEGLGGMPKRDGIVERFDLFLRENHGCPGIDFLHGAVSYV CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH RDQLGLSDADFLYEMCEGILGANYPVPDRMLKLSEVIVGQYLRREMIGKHPFVGEFDVFA HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TEGGTAAMTYIFNTMRENHLIKPGDIIALGMPIFTPYIEIPKLNDYQLDVVHLNATVESN ECCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCEECCCCCCCEEEEEEEEEEECCC WQYSKDELDKLRDPKIKAFFLVNPSNPPSVRLSDESLEYIAEIVKDRPDLVLLTDDVYGT CCCCHHHHHHHCCCCEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCEEEEECCCCHH FADDFVSLFALAPHNTILVYSYSKYFGATGWRLGTIATHRDNVLDRQIAELTEEQKQGLR HHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH ERYESITTDPDSLKFIDRLVADSRTVALNHTAGLATPQQVQMVLFSLFSLMDTPDAYKNA HHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH LKRLIRSRKRALYEEVGIAFDDSDPNQVDYYTILDLEFLGEREYGREFVDWLLKRAEPSD HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHCCCHHH LLFRLAREARVVLLPGRGFGTPHPSGRVSLANLNESDYRKIGRALRKLIEDYVSQYEKET HHHHHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH GKKIRDRASAR HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]