Click here to switch to the map view.

The map label for this gene is pdxJ [H]

Identifier: 238026620

GI number: 238026620

Start: 1042788

End: 1043561

Strand: Direct

Name: pdxJ [H]

Synonym: bglu_1g09670

Alternate gene names: 238026620

Gene position: 1042788-1043561 (Clockwise)

Preceding gene: 238026619

Following gene: 238026621

Centisome position: 26.69

GC content: 71.45

Gene sequence:

>774_bases
ATGAGCTTTTTCCTGACCGCGCCGAACGCCATCGATCTCGGCGTCAACATCGATCATGTCGCGACGCTGCGCAACGTGCG
CGGCACCGCCTATCCGGACCCGATCCGTGCGGCGCTCGCGGCCGAGCAGGCCGGTGCCGACGCGATCACGCTGCACCTGC
GCGAGGATCGCCGCCACATCCGCGACGCGGACGTGCGCGCGCTGCGCCCGCTGCTCACCACGCGCATGAACCTGGAGTGC
GCGGTCACGCCGGAAATGCTCGACATCACCTGCGAGGTGCGTCCGCACGATGCCTGTCTCGTGCCGGAAAAACGCGCCGA
GCTGACCACCGAGGGGGGCCTCGACGTGGCCGGGCACTTCGAGGCGGTGCGTGCGGCCTGCCGGCAGCTCGCCGACGCGG
GCGTGCGCGTGTCGCTGTTCATCGACCCGGACGAGACCCAGATCCGCGCGGCCCACGAGGCCGGCGCGCCGGTCGTGGAG
CTGCATACCGGCGCCTACGCCGAGGCGCACGACGCGGCCGGCCAGCAGCGCGAGTACGAGCGCGTGGCGGCCGCCGTCGA
CGCGGGCGTCGCGCTCGGCCTCAAGGTCAACGCCGGCCACGGCCTGCACTATACGAACGTGCAGCAGATCGCGGCGATCG
ACGGCATCGTCGAGCTCAACATCGGGCACGCGATCGTCGCGCAGTCGATCTTCTCGGGCTGGGACAACGCGGTGCGCGAG
ATGAAGGCGATCATGGTGGCGGCGCGCGTGGCCGCACGCCACGGTGGCCGCTGA

Upstream 100 bases:

>100_bases
CGGTCGCGCAAAGCAAGACGCTGATGCGCTTCCTGCTCAATACCTATCTGGGCGGCACGCCACTCGCGACGCGCCAGATC
CTCATCGATCTGCAAAACCT

Downstream 100 bases:

>100_bases
GGCTCGCCTCATGGCGATCTACGGCATCGGCACCGATATCGTCCAGTTGAGCCGGATCGCGGCGGTGCTCGAGCGCACCG
GCGGCCGGTTCGCCGAGAAG

Product: pyridoxine 5'-phosphate synthase

Products: NA

Alternate protein names: PNP synthase [H]

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSFFLTAPNAIDLGVNIDHVATLRNVRGTAYPDPIRAALAAEQAGADAITLHLREDRRHIRDADVRALRPLLTTRMNLEC
AVTPEMLDITCEVRPHDACLVPEKRAELTTEGGLDVAGHFEAVRAACRQLADAGVRVSLFIDPDETQIRAAHEAGAPVVE
LHTGAYAEAHDAAGQQREYERVAAAVDAGVALGLKVNAGHGLHYTNVQQIAAIDGIVELNIGHAIVAQSIFSGWDNAVRE
MKAIMVAARVAARHGGR

Sequences:

>Translated_257_residues
MSFFLTAPNAIDLGVNIDHVATLRNVRGTAYPDPIRAALAAEQAGADAITLHLREDRRHIRDADVRALRPLLTTRMNLEC
AVTPEMLDITCEVRPHDACLVPEKRAELTTEGGLDVAGHFEAVRAACRQLADAGVRVSLFIDPDETQIRAAHEAGAPVVE
LHTGAYAEAHDAAGQQREYERVAAAVDAGVALGLKVNAGHGLHYTNVQQIAAIDGIVELNIGHAIVAQSIFSGWDNAVRE
MKAIMVAARVAARHGGR
>Mature_256_residues
SFFLTAPNAIDLGVNIDHVATLRNVRGTAYPDPIRAALAAEQAGADAITLHLREDRRHIRDADVRALRPLLTTRMNLECA
VTPEMLDITCEVRPHDACLVPEKRAELTTEGGLDVAGHFEAVRAACRQLADAGVRVSLFIDPDETQIRAAHEAGAPVVEL
HTGAYAEAHDAAGQQREYERVAAAVDAGVALGLKVNAGHGLHYTNVQQIAAIDGIVELNIGHAIVAQSIFSGWDNAVREM
KAIMVAARVAARHGGR

Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate [H]

COG id: COG0854

COG function: function code H; Pyridoxal phosphate biosynthesis protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788917, Length=237, Percent_Identity=64.5569620253165, Blast_Score=305, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR004569 [H]

Pfam domain/function: PF03740 PdxJ [H]

EC number: =2.6.99.2 [H]

Molecular weight: Translated: 27533; Mature: 27401

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFLTAPNAIDLGVNIDHVATLRNVRGTAYPDPIRAALAAEQAGADAITLHLREDRRHI
CEEEEECCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHH
RDADVRALRPLLTTRMNLECAVTPEMLDITCEVRPHDACLVPEKRAELTTEGGLDVAGHF
HCHHHHHHHHHHHHCCCCEEEECCCEEEEEEEECCCCCEECCCHHHCCCCCCCCCHHHHH
EAVRAACRQLADAGVRVSLFIDPDETQIRAAHEAGAPVVELHTGAYAEAHDAAGQQREYE
HHHHHHHHHHHHCCCEEEEEECCCHHHEEEHHHCCCCEEEEECCCCCHHHHHCCHHHHHH
RVAAAVDAGVALGLKVNAGHGLHYTNVQQIAAIDGIVELNIGHAIVAQSIFSGWDNAVRE
HHHHHHHCCEEEEEEEECCCCCEECCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHH
MKAIMVAARVAARHGGR
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFFLTAPNAIDLGVNIDHVATLRNVRGTAYPDPIRAALAAEQAGADAITLHLREDRRHI
EEEEECCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHH
RDADVRALRPLLTTRMNLECAVTPEMLDITCEVRPHDACLVPEKRAELTTEGGLDVAGHF
HCHHHHHHHHHHHHCCCCEEEECCCEEEEEEEECCCCCEECCCHHHCCCCCCCCCHHHHH
EAVRAACRQLADAGVRVSLFIDPDETQIRAAHEAGAPVVELHTGAYAEAHDAAGQQREYE
HHHHHHHHHHHHCCCEEEEEECCCHHHEEEHHHCCCCEEEEECCCCCHHHHHCCHHHHHH
RVAAAVDAGVALGLKVNAGHGLHYTNVQQIAAIDGIVELNIGHAIVAQSIFSGWDNAVRE
HHHHHHHCCEEEEEEEECCCCCEECCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHH
MKAIMVAARVAARHGGR
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA