| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yceD [C]
Identifier: 238026601
GI number: 238026601
Start: 1025174
End: 1025818
Strand: Direct
Name: yceD [C]
Synonym: bglu_1g09470
Alternate gene names: 238026601
Gene position: 1025174-1025818 (Clockwise)
Preceding gene: 238026598
Following gene: 238026602
Centisome position: 26.24
GC content: 63.72
Gene sequence:
>645_bases ATGAATCCTTCTTCTGGCAAACCTGCGGTATCGCTCGATCCGCACCTCGTCGACCTGTTCGAGTTCGCACGCAGTGCCCG GCAGTCGGCCGGCGCGGTGCGGCTCTCGCAGCTGCCGCGCATGGTAAACGAAGTGCCGGCCGATGCGCCAGATCACGACA CTGTGTTTACGTGGCAAGCGGAAGGCTCGACCCAGTCGGAACTGCAGGACGACGGCAGCGAAGGCCAGCAGCCCTATCTG CGGCTCGCGCTGCACGGCGCCGCCTGGCTCGAGTGCCAGCGCTGCATGACGCCGTATTCGCAAGCCTTCGATATCGACAT GGTGTATCGGATCGTGGCGAGCGAAGAGGAGGCGGAAGCCATTCCGCTCGATGAGGACGATGAAGTCGATGTGATCGTGG GTTCGCGCCAGTTCGATCTCGTTGACTTGATCGAAGAGGAGCTGTTGCTCTCGCTGCCGCTCGTGCCGAAGCATGAAGTC TGTCCGGCGGTGCATGAAAGTCTCGTCTCGGGTGCCAGCGGCCCCGCCGAGGATGCCGTGGCCGACGCGGAGATCGAGAG CGAAGGCGGCGAGGGTGGTGAAAAGCGGCCCAATCCGTTCGCGGCGCTCGAGGCGCTGAAGCGGGACGGCGACAAGAAAC ACTGA
Upstream 100 bases:
>100_bases GTCCGCAAGCCGCGGCGGCGGGCGGAGCGGCGCGGAACCCGCGGGCGCACCCGGCACCGGCGGGGTCGAGGACGGCAAGC ACAATACGGCAGGAGCGCAC
Downstream 100 bases:
>100_bases GTAGGTTGGAGCACGGGAAGGCGTCGGGCGGCAGTGCCCGGATGTGGTTAGGCGCCGTATCGGGCTGTGTTAGAATCCGG AAAATTTTTAGGAGTGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MNPSSGKPAVSLDPHLVDLFEFARSARQSAGAVRLSQLPRMVNEVPADAPDHDTVFTWQAEGSTQSELQDDGSEGQQPYL RLALHGAAWLECQRCMTPYSQAFDIDMVYRIVASEEEAEAIPLDEDDEVDVIVGSRQFDLVDLIEEELLLSLPLVPKHEV CPAVHESLVSGASGPAEDAVADAEIESEGGEGGEKRPNPFAALEALKRDGDKKH
Sequences:
>Translated_214_residues MNPSSGKPAVSLDPHLVDLFEFARSARQSAGAVRLSQLPRMVNEVPADAPDHDTVFTWQAEGSTQSELQDDGSEGQQPYL RLALHGAAWLECQRCMTPYSQAFDIDMVYRIVASEEEAEAIPLDEDDEVDVIVGSRQFDLVDLIEEELLLSLPLVPKHEV CPAVHESLVSGASGPAEDAVADAEIESEGGEGGEKRPNPFAALEALKRDGDKKH >Mature_214_residues MNPSSGKPAVSLDPHLVDLFEFARSARQSAGAVRLSQLPRMVNEVPADAPDHDTVFTWQAEGSTQSELQDDGSEGQQPYL RLALHGAAWLECQRCMTPYSQAFDIDMVYRIVASEEEAEAIPLDEDDEVDVIVGSRQFDLVDLIEEELLLSLPLVPKHEV CPAVHESLVSGASGPAEDAVADAEIESEGGEGGEKRPNPFAALEALKRDGDKKH
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23247; Mature: 23247
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPSSGKPAVSLDPHLVDLFEFARSARQSAGAVRLSQLPRMVNEVPADAPDHDTVFTWQA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC EGSTQSELQDDGSEGQQPYLRLALHGAAWLECQRCMTPYSQAFDIDMVYRIVASEEEAEA CCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC IPLDEDDEVDVIVGSRQFDLVDLIEEELLLSLPLVPKHEVCPAVHESLVSGASGPAEDAV CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHH ADAEIESEGGEGGEKRPNPFAALEALKRDGDKKH HCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MNPSSGKPAVSLDPHLVDLFEFARSARQSAGAVRLSQLPRMVNEVPADAPDHDTVFTWQA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC EGSTQSELQDDGSEGQQPYLRLALHGAAWLECQRCMTPYSQAFDIDMVYRIVASEEEAEA CCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC IPLDEDDEVDVIVGSRQFDLVDLIEEELLLSLPLVPKHEVCPAVHESLVSGASGPAEDAV CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHH ADAEIESEGGEGGEKRPNPFAALEALKRDGDKKH HCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA