| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026586
Identifier: 238026586
GI number: 238026586
Start: 1007820
End: 1009427
Strand: Direct
Name: 238026586
Synonym: bglu_1g09320
Alternate gene names: NA
Gene position: 1007820-1009427 (Clockwise)
Preceding gene: 238026585
Following gene: 238026587
Centisome position: 25.8
GC content: 72.2
Gene sequence:
>1608_bases ATGACGGCCGTCACGCGGCGCCAGGCCGCTTTCCGTTTGTCCGTTCCCGCCACGTTCTCCGCCGGCTCCACGCTCGCCGC CCCAGGTCGCGGCCGGCGGCGGCGCGCGCCCGGCCTGCCGGCCGTGCTCGCCGTGCTCGGCGCGCTCCTGCTCGGCGGCG CGCCCGCCACCGCCTCGGCCGCCGCGCTCGACGGCGCCACGCTGTCCGCGCTGTGGGGCATCCCGTTCGCCGGCATGCTG CTGTCGATCGCGCTGTGCCCGCTCGTCGCGCCGGCGTTCTGGCATCGGCATTTCGGCAAGATCGCGGCCGGCTGGGCCGG CGCCTTGCTCGTGCCGTTCGCGGTCGCGTTCGGCGCGGCGGCCGCGGGCGCCACGCTGGTTCACGCGCTGCTCGAGGAAT ACCTGCCGTTCATCGTGCTGCTGACGGCGCTCTACACGGTGGCGGGCGGTATCTGCCTGCATGGCGCGCTGCGCGCCTCG CCCGCGCGCAATACCGCGCTGCTTGCGCTCGGTGCCGTGCTGGCGAGCGTGATGGGCACCACCGGTGCGGCGATGCTGCT GATCCGCCCGCTGCTGCGCGCGAACGCCGCCCGCCCGCGTGTCGTGCATGTCGTGGTGTTCTTCATTTTTCTCGTCGCCA ACGCGGGCGGCGCGCTCTCGCCGCTCGGCGACCCGCCGCTGTTCCTCGGCTTCCTGAACGGTGTCGATTTCTTCTGGACC ACGATCCACCTCGCGCTGCCCACGCTGTTCGTCTGCGCCGTGCTGCTGACCGTGTTCTACGTGCTCGACGCGTGGCGCTT TCGCCGCGACGGCGTGCTCGGGCGCGCGCTCGATCACGACGCGGACCCGCTCGACCACGAGGCCGGCGAGGCGCGGGCCG TCGCGTTCGGGCCCAACCGGCCGGGCGCCCAGCCGGCGGCCGGCACCCGCCTGTGGCTCGAAGGCCGGATCAACTTCGTG CTGCTCGCAGCGATCGTCGCGCTGGTGCTGATGAGCGGGATCTGGAAGCCCGGTATCGAGTTCGAGGTGGCCGGCACCCA CGTGGCGCTGCAGAACCTGGTGCGGGACCTCGCGCTGGTGGCGGTCGCGCTGCTGTCGCTCGCCCTCACGCCGCGCTCGG CGCGCGAGGGCAACGCGTTCGACTGGGCCCCGATCGAGGAGGTCGCGAAGCTGTTCGCCGGCATCTTCGTGACGATCGCG CCCGTCATCATGATCCTGCGCGCGGGCGCCGGCGGCGCGTTCGCGCCGATCGTCCGGCTCGTCACGGACGCGGGCGGCGA GCCGGTCGTGCCGATGCTGTTCTGGGCCACCGGGCTGCTGTCGTCGTTCCTCGACAACGCGCCGACCTACCTCGTATTCT TCAACCTCGCCGGCGGCGACGCGGCGAGCCTGATGACGACGGGCGCCGCAGCGCTCGCGGCGATTTCGGCCGGCGCCGTG TTCATGGGCGCCAACAGCTACATCGGCAACGCGCCGAACTTCATGGTCAAGGCCATCGCCGAGGCGCGCGGCATCCGCAT GCCGAGCTTTTTCGGCTATCTCGGCTGGTCGTTCGGCATCCTCTTGCCGGTGTTCGCACTGGCGACGTGGCTGTTCTTTT CCGCCTGA
Upstream 100 bases:
>100_bases ACCTGGTGTCGGGGCCCTCGCGCACCGGCGATATCGAGCAGACCATCGTCCTCGGCGCGCACGGCCCGTATCGCGTTCAC GCGATCCTCGTGCGCGGCGC
Downstream 100 bases:
>100_bases ACGGGCGGGTTTCGGCAGGTGTGGGCTGCGTGCCGCGGCCCGGTGGGGCCGCGAGGCGCCGTCCCACCGGGCCGCGCACG CTCGACGGAGACGGCTTATG
Product: Na+/H+ antiporter NhaD
Products: NA
Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MTAVTRRQAAFRLSVPATFSAGSTLAAPGRGRRRRAPGLPAVLAVLGALLLGGAPATASAAALDGATLSALWGIPFAGML LSIALCPLVAPAFWHRHFGKIAAGWAGALLVPFAVAFGAAAAGATLVHALLEEYLPFIVLLTALYTVAGGICLHGALRAS PARNTALLALGAVLASVMGTTGAAMLLIRPLLRANAARPRVVHVVVFFIFLVANAGGALSPLGDPPLFLGFLNGVDFFWT TIHLALPTLFVCAVLLTVFYVLDAWRFRRDGVLGRALDHDADPLDHEAGEARAVAFGPNRPGAQPAAGTRLWLEGRINFV LLAAIVALVLMSGIWKPGIEFEVAGTHVALQNLVRDLALVAVALLSLALTPRSAREGNAFDWAPIEEVAKLFAGIFVTIA PVIMILRAGAGGAFAPIVRLVTDAGGEPVVPMLFWATGLLSSFLDNAPTYLVFFNLAGGDAASLMTTGAAALAAISAGAV FMGANSYIGNAPNFMVKAIAEARGIRMPSFFGYLGWSFGILLPVFALATWLFFSA
Sequences:
>Translated_535_residues MTAVTRRQAAFRLSVPATFSAGSTLAAPGRGRRRRAPGLPAVLAVLGALLLGGAPATASAAALDGATLSALWGIPFAGML LSIALCPLVAPAFWHRHFGKIAAGWAGALLVPFAVAFGAAAAGATLVHALLEEYLPFIVLLTALYTVAGGICLHGALRAS PARNTALLALGAVLASVMGTTGAAMLLIRPLLRANAARPRVVHVVVFFIFLVANAGGALSPLGDPPLFLGFLNGVDFFWT TIHLALPTLFVCAVLLTVFYVLDAWRFRRDGVLGRALDHDADPLDHEAGEARAVAFGPNRPGAQPAAGTRLWLEGRINFV LLAAIVALVLMSGIWKPGIEFEVAGTHVALQNLVRDLALVAVALLSLALTPRSAREGNAFDWAPIEEVAKLFAGIFVTIA PVIMILRAGAGGAFAPIVRLVTDAGGEPVVPMLFWATGLLSSFLDNAPTYLVFFNLAGGDAASLMTTGAAALAAISAGAV FMGANSYIGNAPNFMVKAIAEARGIRMPSFFGYLGWSFGILLPVFALATWLFFSA >Mature_534_residues TAVTRRQAAFRLSVPATFSAGSTLAAPGRGRRRRAPGLPAVLAVLGALLLGGAPATASAAALDGATLSALWGIPFAGMLL SIALCPLVAPAFWHRHFGKIAAGWAGALLVPFAVAFGAAAAGATLVHALLEEYLPFIVLLTALYTVAGGICLHGALRASP ARNTALLALGAVLASVMGTTGAAMLLIRPLLRANAARPRVVHVVVFFIFLVANAGGALSPLGDPPLFLGFLNGVDFFWTT IHLALPTLFVCAVLLTVFYVLDAWRFRRDGVLGRALDHDADPLDHEAGEARAVAFGPNRPGAQPAAGTRLWLEGRINFVL LAAIVALVLMSGIWKPGIEFEVAGTHVALQNLVRDLALVAVALLSLALTPRSAREGNAFDWAPIEEVAKLFAGIFVTIAP VIMILRAGAGGAFAPIVRLVTDAGGEPVVPMLFWATGLLSSFLDNAPTYLVFFNLAGGDAASLMTTGAAALAAISAGAVF MGANSYIGNAPNFMVKAIAEARGIRMPSFFGYLGWSFGILLPVFALATWLFFSA
Specific function: Unknown
COG id: COG1055
COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55560; Mature: 55429
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVTRRQAAFRLSVPATFSAGSTLAAPGRGRRRRAPGLPAVLAVLGALLLGGAPATASA CCCCHHCCHHEEEECCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH AALDGATLSALWGIPFAGMLLSIALCPLVAPAFWHRHFGKIAAGWAGALLVPFAVAFGAA HHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGATLVHALLEEYLPFIVLLTALYTVAGGICLHGALRASPARNTALLALGAVLASVMGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC TGAAMLLIRPLLRANAARPRVVHVVVFFIFLVANAGGALSPLGDPPLFLGFLNGVDFFWT CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH TIHLALPTLFVCAVLLTVFYVLDAWRFRRDGVLGRALDHDADPLDHEAGEARAVAFGPNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEECCCC PGAQPAAGTRLWLEGRINFVLLAAIVALVLMSGIWKPGIEFEVAGTHVALQNLVRDLALV CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH AVALLSLALTPRSAREGNAFDWAPIEEVAKLFAGIFVTIAPVIMILRAGAGGAFAPIVRL HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VTDAGGEPVVPMLFWATGLLSSFLDNAPTYLVFFNLAGGDAASLMTTGAAALAAISAGAV HHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHH FMGANSYIGNAPNFMVKAIAEARGIRMPSFFGYLGWSFGILLPVFALATWLFFSA EECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAVTRRQAAFRLSVPATFSAGSTLAAPGRGRRRRAPGLPAVLAVLGALLLGGAPATASA CCCHHCCHHEEEECCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH AALDGATLSALWGIPFAGMLLSIALCPLVAPAFWHRHFGKIAAGWAGALLVPFAVAFGAA HHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAGATLVHALLEEYLPFIVLLTALYTVAGGICLHGALRASPARNTALLALGAVLASVMGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC TGAAMLLIRPLLRANAARPRVVHVVVFFIFLVANAGGALSPLGDPPLFLGFLNGVDFFWT CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH TIHLALPTLFVCAVLLTVFYVLDAWRFRRDGVLGRALDHDADPLDHEAGEARAVAFGPNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEECCCC PGAQPAAGTRLWLEGRINFVLLAAIVALVLMSGIWKPGIEFEVAGTHVALQNLVRDLALV CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH AVALLSLALTPRSAREGNAFDWAPIEEVAKLFAGIFVTIAPVIMILRAGAGGAFAPIVRL HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VTDAGGEPVVPMLFWATGLLSSFLDNAPTYLVFFNLAGGDAASLMTTGAAALAAISAGAV HHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHH FMGANSYIGNAPNFMVKAIAEARGIRMPSFFGYLGWSFGILLPVFALATWLFFSA EECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA