Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yuxL [H]
Identifier: 238025533
GI number: 238025533
Start: 2765056
End: 2766924
Strand: Reverse
Name: yuxL [H]
Synonym: bglu_2g22290
Alternate gene names: 238025533
Gene position: 2766924-2765056 (Counterclockwise)
Preceding gene: 238025534
Following gene: 238025531
Centisome position: 97.86
GC content: 73.52
Gene sequence:
>1869_bases ATGCCAGAGAATCCCGCCGACTCAAGCCTTGAGCCCGTCCGCGACCACGGCGCGCCGCTCACGGCCGCAGCCGCCGTCGC CGCCGGCCGCGACTTCATCGAACTGAGCGCCGGCCCGTCCGGCGTGTTCTGGACCGAATACGACCCCGCCGACGCGATGT GCCGGATCTGGCGTGCGCGCCACGGCTCGATCGAGCGCGTGAGCCCGGACGGCTTCAGCGCGCGCGGGCGCGTCTACGAG TACGGCGGCGGGGCGTTCTGCGTGGCGGGCGACTGGGTGGCGTTCGTCAACGAGCGCGACCAGCGCATCTACCGCTTCTC CCCCGGCAGCGCCGCCGCGCCCGAGCCGCTGAGCGCCGAGGGTTTGCGCTACGGCGACCTGCGCGCCTCGCACGGGCGGA TCCTGGCCGTGGAGCAGGACGGCGAGACGCACCGGCTCGTGTCGATCGGCCTGCACGACGGCAGGCGCGAGCTGCTCGCC GAGGGCGCCGATTTCTACGCGTCGCCGGTATCGAGCGCCGACGGTGCGCGGCTCGCCTGGATCGAATGGCAGCATCCGCA CCAGCCGTGGACGGCCACCCAGCTCGTGCTGCGCGAGACCGGGCCGGACGGGCGGCCGGCCGCGCCGCGCGTGGTGGCCG GGGCGGCGCACGACGAGGCGCTGCAGCAGCCGGCCTTCGATCGCGACGGCCGGCTGGTCTGCCTGGGCGATCGCGGCAAC TTCTGGCAGCCGTGGCGGCTCGAGGGCGAGCGCTTGGTGCCCTTGCCGGCCGCGGCCGGCGACCATGCCGCCGCGCCGTG GCAGCTCGGCGCCCGCAGCTGGCTGCCGCTCGACGACGGCACCGTGTTCGCGAGCTGGTTCGACGAGGGCTGGGGCCGGC TCGGCGTCTACGCGGCCGACGGCACGCTCACGCCGCTCGCGCCCGGCTACACCCTGTTTCACCATCTCGCCGCCGACGCG ACGCATCTGTACTGCGTGGCCGCCTCGCCCAACTGCCCGGCCGCGATCCTCGCGATCGACCGGCGCGATCATCGCGTCAG CGTGCTGCGGGAGGTGGCCGCGTCGATTCCGGCCGAGCGCATCACGCAGCCGCGCGCGCTGCGCTTCCCGAGCGGCGACG GCCAGGCCTATGGCTACCTGTACCTGCCCGATGCGGCGACCGAGGCCGGCGCGGGCGAGCCGCCGCCGGTGATCGTGTTC GCGCACGGCGGCCCGACCGCGGCGCTGTATCCGGTGTTCAGCCCGCGCCACGAGTACTGGGTGCAGCGCGGCTTCGCGAT CGTGCTGCTCAACTATCGCGGCAGCACCGGCTATGGCCGCGCGTTCCGGCAGGCGCTGCACCTGGCCTGGGGCGTGGCCG ACGTCGACGACGCCTGCGCCGTGGTCGCCCACCTGGCCGGGCAGGGCCTCGTCGATGCGCGGCGCGCGTTCATCCGCGGC GGCAGCGCGGGCGGCTTTACCGTGCTCAACGCGCTGGCGTTGCGCGACGTGTTCCGTGGCGGCGCGAGCCTCTACGGCGT CAGCGACCCGTTGCAGCTCGACGCCCATACCCACAAGTTCGAGGCACGCTACCTGCGCTGGCTGATCGGCGATCCGGTGG CCGACCGAGAGCGCTATCTGGCGCGCACGCCGCTCGCGCATGCCGATGCGATCCGCGCGCCGGTGATCTTCTTCCAGGGC GAGCTCGACGTCGTGGTGACGCCGGACCAGACGCGCAGCATGGTCGCCGCGCTCAAGGCCAACGGCGTGCCCAACGAGGT CCATTACTACGCCGACGAGCGGCACGGCTTTCGCCACGCCGCGAACCAGGCCCATGCGCTCGAAGCCGAGTACGCGTTCT ACCGGCGCATCCTGGACGGGGAAATCTGA
Upstream 100 bases:
>100_bases TGCAGCAAGTCGCCCTATCACCCGGTGATCCTGCGCGCGCGCGACGCAGCCGTGCCGGCCCGGCCCACCGTTTCCACCAC GCATCCGCTGATCTTCCGCA
Downstream 100 bases:
>100_bases CCGGAGCGGAGGCGGCCGCGATCCCGGGCGATCCGGCCTGGGCGCGCGGCGCCGCCGCCATGAAAAAAGGCTGCCCGGGG GCAGCCTTTCGCGTCGGCGC
Product: dipeptidyl aminopeptidase/acylaminoacyl-peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 622; Mature: 621
Protein sequence:
>622_residues MPENPADSSLEPVRDHGAPLTAAAAVAAGRDFIELSAGPSGVFWTEYDPADAMCRIWRARHGSIERVSPDGFSARGRVYE YGGGAFCVAGDWVAFVNERDQRIYRFSPGSAAAPEPLSAEGLRYGDLRASHGRILAVEQDGETHRLVSIGLHDGRRELLA EGADFYASPVSSADGARLAWIEWQHPHQPWTATQLVLRETGPDGRPAAPRVVAGAAHDEALQQPAFDRDGRLVCLGDRGN FWQPWRLEGERLVPLPAAAGDHAAAPWQLGARSWLPLDDGTVFASWFDEGWGRLGVYAADGTLTPLAPGYTLFHHLAADA THLYCVAASPNCPAAILAIDRRDHRVSVLREVAASIPAERITQPRALRFPSGDGQAYGYLYLPDAATEAGAGEPPPVIVF AHGGPTAALYPVFSPRHEYWVQRGFAIVLLNYRGSTGYGRAFRQALHLAWGVADVDDACAVVAHLAGQGLVDARRAFIRG GSAGGFTVLNALALRDVFRGGASLYGVSDPLQLDAHTHKFEARYLRWLIGDPVADRERYLARTPLAHADAIRAPVIFFQG ELDVVVTPDQTRSMVAALKANGVPNEVHYYADERHGFRHAANQAHALEAEYAFYRRILDGEI
Sequences:
>Translated_622_residues MPENPADSSLEPVRDHGAPLTAAAAVAAGRDFIELSAGPSGVFWTEYDPADAMCRIWRARHGSIERVSPDGFSARGRVYE YGGGAFCVAGDWVAFVNERDQRIYRFSPGSAAAPEPLSAEGLRYGDLRASHGRILAVEQDGETHRLVSIGLHDGRRELLA EGADFYASPVSSADGARLAWIEWQHPHQPWTATQLVLRETGPDGRPAAPRVVAGAAHDEALQQPAFDRDGRLVCLGDRGN FWQPWRLEGERLVPLPAAAGDHAAAPWQLGARSWLPLDDGTVFASWFDEGWGRLGVYAADGTLTPLAPGYTLFHHLAADA THLYCVAASPNCPAAILAIDRRDHRVSVLREVAASIPAERITQPRALRFPSGDGQAYGYLYLPDAATEAGAGEPPPVIVF AHGGPTAALYPVFSPRHEYWVQRGFAIVLLNYRGSTGYGRAFRQALHLAWGVADVDDACAVVAHLAGQGLVDARRAFIRG GSAGGFTVLNALALRDVFRGGASLYGVSDPLQLDAHTHKFEARYLRWLIGDPVADRERYLARTPLAHADAIRAPVIFFQG ELDVVVTPDQTRSMVAALKANGVPNEVHYYADERHGFRHAANQAHALEAEYAFYRRILDGEI >Mature_621_residues PENPADSSLEPVRDHGAPLTAAAAVAAGRDFIELSAGPSGVFWTEYDPADAMCRIWRARHGSIERVSPDGFSARGRVYEY GGGAFCVAGDWVAFVNERDQRIYRFSPGSAAAPEPLSAEGLRYGDLRASHGRILAVEQDGETHRLVSIGLHDGRRELLAE GADFYASPVSSADGARLAWIEWQHPHQPWTATQLVLRETGPDGRPAAPRVVAGAAHDEALQQPAFDRDGRLVCLGDRGNF WQPWRLEGERLVPLPAAAGDHAAAPWQLGARSWLPLDDGTVFASWFDEGWGRLGVYAADGTLTPLAPGYTLFHHLAADAT HLYCVAASPNCPAAILAIDRRDHRVSVLREVAASIPAERITQPRALRFPSGDGQAYGYLYLPDAATEAGAGEPPPVIVFA HGGPTAALYPVFSPRHEYWVQRGFAIVLLNYRGSTGYGRAFRQALHLAWGVADVDDACAVVAHLAGQGLVDARRAFIRGG SAGGFTVLNALALRDVFRGGASLYGVSDPLQLDAHTHKFEARYLRWLIGDPVADRERYLARTPLAHADAIRAPVIFFQGE LDVVVTPDQTRSMVAALKANGVPNEVHYYADERHGFRHAANQAHALEAEYAFYRRILDGEI
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family [H]
Homologues:
Organism=Homo sapiens, GI18450280, Length=291, Percent_Identity=25.4295532646048, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI37577089, Length=298, Percent_Identity=25.1677852348993, Blast_Score=70, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17552908, Length=614, Percent_Identity=29.9674267100977, Blast_Score=262, Evalue=4e-70, Organism=Caenorhabditis elegans, GI25144540, Length=235, Percent_Identity=29.3617021276596, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25144537, Length=235, Percent_Identity=29.3617021276596, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI25149159, Length=368, Percent_Identity=25.5434782608696, Blast_Score=79, Evalue=9e-15, Organism=Caenorhabditis elegans, GI25144543, Length=121, Percent_Identity=32.2314049586777, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR011659 - InterPro: IPR001375 [H]
Pfam domain/function: PF07676 PD40; PF00326 Peptidase_S9 [H]
EC number: NA
Molecular weight: Translated: 67526; Mature: 67395
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPENPADSSLEPVRDHGAPLTAAAAVAAGRDFIELSAGPSGVFWTEYDPADAMCRIWRAR CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHC HGSIERVSPDGFSARGRVYEYGGGAFCVAGDWVAFVNERDQRIYRFSPGSAAAPEPLSAE CCCCEEECCCCCCCCCEEEEECCCEEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCC GLRYGDLRASHGRILAVEQDGETHRLVSIGLHDGRRELLAEGADFYASPVSSADGARLAW CCEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEE IEWQHPHQPWTATQLVLRETGPDGRPAAPRVVAGAAHDEALQQPAFDRDGRLVCLGDRGN EEECCCCCCCHHHEEEEEECCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEEECCCCC FWQPWRLEGERLVPLPAAAGDHAAAPWQLGARSWLPLDDGTVFASWFDEGWGRLGVYAAD CCCCEECCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEEC GTLTPLAPGYTLFHHLAADATHLYCVAASPNCPAAILAIDRRDHRVSVLREVAASIPAER CCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCHHH ITQPRALRFPSGDGQAYGYLYLPDAATEAGAGEPPPVIVFAHGGPTAALYPVFSPRHEYW CCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHH VQRGFAIVLLNYRGSTGYGRAFRQALHLAWGVADVDDACAVVAHLAGQGLVDARRAFIRG HHCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC GSAGGFTVLNALALRDVFRGGASLYGVSDPLQLDAHTHKFEARYLRWLIGDPVADRERYL CCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHH ARTPLAHADAIRAPVIFFQGELDVVVTPDQTRSMVAALKANGVPNEVHYYADERHGFRHA HHCCCCHHHHHCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH ANQAHALEAEYAFYRRILDGEI CCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PENPADSSLEPVRDHGAPLTAAAAVAAGRDFIELSAGPSGVFWTEYDPADAMCRIWRAR CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCEEEECCCCHHHHHHHHHHC HGSIERVSPDGFSARGRVYEYGGGAFCVAGDWVAFVNERDQRIYRFSPGSAAAPEPLSAE CCCCEEECCCCCCCCCEEEEECCCEEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCC GLRYGDLRASHGRILAVEQDGETHRLVSIGLHDGRRELLAEGADFYASPVSSADGARLAW CCEECCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEE IEWQHPHQPWTATQLVLRETGPDGRPAAPRVVAGAAHDEALQQPAFDRDGRLVCLGDRGN EEECCCCCCCHHHEEEEEECCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEEECCCCC FWQPWRLEGERLVPLPAAAGDHAAAPWQLGARSWLPLDDGTVFASWFDEGWGRLGVYAAD CCCCEECCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEEC GTLTPLAPGYTLFHHLAADATHLYCVAASPNCPAAILAIDRRDHRVSVLREVAASIPAER CCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCHHH ITQPRALRFPSGDGQAYGYLYLPDAATEAGAGEPPPVIVFAHGGPTAALYPVFSPRHEYW CCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHH VQRGFAIVLLNYRGSTGYGRAFRQALHLAWGVADVDDACAVVAHLAGQGLVDARRAFIRG HHCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCC GSAGGFTVLNALALRDVFRGGASLYGVSDPLQLDAHTHKFEARYLRWLIGDPVADRERYL CCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHH ARTPLAHADAIRAPVIFFQGELDVVVTPDQTRSMVAALKANGVPNEVHYYADERHGFRHA HHCCCCHHHHHCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH ANQAHALEAEYAFYRRILDGEI CCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 3098560 [H]