Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025310
Identifier: 238025310
GI number: 238025310
Start: 2465323
End: 2467281
Strand: Reverse
Name: 238025310
Synonym: bglu_2g19840
Alternate gene names: NA
Gene position: 2467281-2465323 (Counterclockwise)
Preceding gene: 238025311
Following gene: 238025307
Centisome position: 87.27
GC content: 64.01
Gene sequence:
>1959_bases ATGCAACAACGACCGCGGTACGATTTCTCATGTCGTCCGGATTTCCTGGCCTGTCTTCCTCTTGTCGTCGCCGCGACACT CTACGCACCATTGGCGCAGGCCGCGAGCGACTGGGTGCCGACGCATACCGCCGCGTTTCTGGTGCCGACAGCACCGGCGG CGAATCCGGCGAGCAGCCTTCTCATGCAGTCGCTGACGGCGTCGGCGGTGTCGGCACCGGCCTATAGGATGAAGATGAAC GGTGCTCCCGCGCTTGCCGGTACGCGAATCGCGCCGCTCGAAATCAGCCAGCCGGTGCGCATCGCCGTGACGTTGAAGCT GCGCAATCAAACGCAGCTCGACCAACTCGTCAGTGCCGTCAGCACCCCTGGTAATCGCGATTACGGCCGGTTCATCACCC GGGCCGAATTTCAGCAGCGCTTCGCGCCGCTGGATACGGACGCGGCGGCGGTGGCGTCGTATCTGCGCTCGAACGGCTTT TCGGATATTCAAGTGGCGCCGGGCAACGGCATCGTGACCGCGGTGGGCAACGCCAGCACGGTTCAAGCGGCCTTCCATGC GCGCCTGAAACGTTTCAGCTACGACGGCCGAACCGTCTATGCAAACGATACCGGCGCATTTGTTCCAGCCAAGCTGGGCT CGGTGGTGGACGCGATCGTGGGCTTGCAGGATGTCGTGCGCCCGAAGCATCTGTCGTCGCGGATCGCCAGCGACGTTGCC GCTCAGGCGGCCGATCCGACGAGCCGCACCGAAACCGGCACGCCGGTCGTCCATGCCGTGACGGACTTTGCGAAGATCTA CGGTGCGAGCCATTTGCCGCCTGCCACGGGTACGACGGTCGGCATCATCACCTGGGGCGACGTCAGTCAAACGATTGCCG ATCTAAAGACGTTCACGGCGCAAGCCGGCTTGCCGACCGTGGATACGCTCGTCGTGCCCGGCGGCGAGGGGACGCTTGCC GACGACGGCAATCCGGCGGAGTGGAACCTGGATAGCCAAGCCATCGTCGGAACCTCGGGCGGCGTCAAGAAGCTGATCTT CTATTCGGCGATCAATGGCGACAGCGAGGACAGCCAACTGACGGAAGGCCGGCTGGTCGAGGCGATGTATAAGGCGGTGA CCGATAATCAGGCGAAAATCATCAATGTGTCTTTGAGCCTGGACGAGACTGCCGAAAACGCCGCGGGCGTCCAAGCCGTG ACCGACGAATTGTTCAAGCAAGCCGCCGTTCAGGGGCAAATCTTCTCGGTCGCTTCGGGCGATGGCGGCCCCTATCAAGC CGCTGTTTCTCCGCAGGGCAAATCAGGCGCGATCGGCACGTTCGACGGCACGACGGTCACGCCCACGGTCGACCTCACGC AGTACAGCGTGGCATGGCCCGCCAATTCACCGTATGTGGTGGCGGTGGGCGGAACGAAGCTCTCGACCATCGGCGCGACG CATTGGGCTGGCGAGACGGTGTGGAACGATGGCCTGTTCTACGCGGACCTCGACGGGCAGGGGCGGCCGGCCGACAACTA TGTCCGCCTGCTCGCGACCGGGAGCGGCATCAGCAAGTTCGAGGACGCGCCGGCGTGGCAGACGCTCGCGCTGGGCTCGT CCTTCACCCGGCGCGCGCTGCCCGACGTCTCGTTCGCCGCTTCGCGTAGTTCCGGCGCCTGGATTATCGTGAACGGCAAG GCGGAGATGCATGCCGGGACCAGCCTTGCCTCGCCGATTTTCGTGGGGGGCTTCGCCCGTGTCGAAACGGCCCACGATAA CGCGATCGGCTTGCCCACGCCGTGGCTCTATGCGAACGTATTGCGCCATCACTCGACGTTTCGCGACGTCACCGAGGGCA ATAACGGCTATCAAGGGCATGGCTACACGGCGAAGGCGGGATGGGACAACGCAACCGGCTTTGGCAGCCTCGATTTCGGA AAGCTGAGCAAGGTGATCGAAGCGGACTCGGCCCACTAG
Upstream 100 bases:
>100_bases CTCGATGCCCGCATTGAATCAACCCAGCCGGCCTCCTCGTGAGCCGGGGCGGTGCAGCGGGCAGGCGGGGCACTTTTACC AAGCAAGAGGCTCAAAAAAT
Downstream 100 bases:
>100_bases CCGTTGCCCCGCCGGCCACGGCAGCGGGCATGCGGCCCCGGCGGTGACGGGACGCGTTCCCCGCTGAACTGCGACGAACC GAAAAACGCCCGAGGGGCGG
Product: serine protease, subtilase family protein
Products: NA
Alternate protein names: Carboxyl proteinase; XCP; Xanthomonapepsin; Xanthomonas aspartic proteinase [H]
Number of amino acids: Translated: 652; Mature: 652
Protein sequence:
>652_residues MQQRPRYDFSCRPDFLACLPLVVAATLYAPLAQAASDWVPTHTAAFLVPTAPAANPASSLLMQSLTASAVSAPAYRMKMN GAPALAGTRIAPLEISQPVRIAVTLKLRNQTQLDQLVSAVSTPGNRDYGRFITRAEFQQRFAPLDTDAAAVASYLRSNGF SDIQVAPGNGIVTAVGNASTVQAAFHARLKRFSYDGRTVYANDTGAFVPAKLGSVVDAIVGLQDVVRPKHLSSRIASDVA AQAADPTSRTETGTPVVHAVTDFAKIYGASHLPPATGTTVGIITWGDVSQTIADLKTFTAQAGLPTVDTLVVPGGEGTLA DDGNPAEWNLDSQAIVGTSGGVKKLIFYSAINGDSEDSQLTEGRLVEAMYKAVTDNQAKIINVSLSLDETAENAAGVQAV TDELFKQAAVQGQIFSVASGDGGPYQAAVSPQGKSGAIGTFDGTTVTPTVDLTQYSVAWPANSPYVVAVGGTKLSTIGAT HWAGETVWNDGLFYADLDGQGRPADNYVRLLATGSGISKFEDAPAWQTLALGSSFTRRALPDVSFAASRSSGAWIIVNGK AEMHAGTSLASPIFVGGFARVETAHDNAIGLPTPWLYANVLRHHSTFRDVTEGNNGYQGHGYTAKAGWDNATGFGSLDFG KLSKVIEADSAH
Sequences:
>Translated_652_residues MQQRPRYDFSCRPDFLACLPLVVAATLYAPLAQAASDWVPTHTAAFLVPTAPAANPASSLLMQSLTASAVSAPAYRMKMN GAPALAGTRIAPLEISQPVRIAVTLKLRNQTQLDQLVSAVSTPGNRDYGRFITRAEFQQRFAPLDTDAAAVASYLRSNGF SDIQVAPGNGIVTAVGNASTVQAAFHARLKRFSYDGRTVYANDTGAFVPAKLGSVVDAIVGLQDVVRPKHLSSRIASDVA AQAADPTSRTETGTPVVHAVTDFAKIYGASHLPPATGTTVGIITWGDVSQTIADLKTFTAQAGLPTVDTLVVPGGEGTLA DDGNPAEWNLDSQAIVGTSGGVKKLIFYSAINGDSEDSQLTEGRLVEAMYKAVTDNQAKIINVSLSLDETAENAAGVQAV TDELFKQAAVQGQIFSVASGDGGPYQAAVSPQGKSGAIGTFDGTTVTPTVDLTQYSVAWPANSPYVVAVGGTKLSTIGAT HWAGETVWNDGLFYADLDGQGRPADNYVRLLATGSGISKFEDAPAWQTLALGSSFTRRALPDVSFAASRSSGAWIIVNGK AEMHAGTSLASPIFVGGFARVETAHDNAIGLPTPWLYANVLRHHSTFRDVTEGNNGYQGHGYTAKAGWDNATGFGSLDFG KLSKVIEADSAH >Mature_652_residues MQQRPRYDFSCRPDFLACLPLVVAATLYAPLAQAASDWVPTHTAAFLVPTAPAANPASSLLMQSLTASAVSAPAYRMKMN GAPALAGTRIAPLEISQPVRIAVTLKLRNQTQLDQLVSAVSTPGNRDYGRFITRAEFQQRFAPLDTDAAAVASYLRSNGF SDIQVAPGNGIVTAVGNASTVQAAFHARLKRFSYDGRTVYANDTGAFVPAKLGSVVDAIVGLQDVVRPKHLSSRIASDVA AQAADPTSRTETGTPVVHAVTDFAKIYGASHLPPATGTTVGIITWGDVSQTIADLKTFTAQAGLPTVDTLVVPGGEGTLA DDGNPAEWNLDSQAIVGTSGGVKKLIFYSAINGDSEDSQLTEGRLVEAMYKAVTDNQAKIINVSLSLDETAENAAGVQAV TDELFKQAAVQGQIFSVASGDGGPYQAAVSPQGKSGAIGTFDGTTVTPTVDLTQYSVAWPANSPYVVAVGGTKLSTIGAT HWAGETVWNDGLFYADLDGQGRPADNYVRLLATGSGISKFEDAPAWQTLALGSSFTRRALPDVSFAASRSSGAWIIVNGK AEMHAGTSLASPIFVGGFARVETAHDNAIGLPTPWLYANVLRHHSTFRDVTEGNNGYQGHGYTAKAGWDNATGFGSLDFG KLSKVIEADSAH
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007280 - InterPro: IPR015366 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR022409 - InterPro: IPR000601 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF00801 PKD; PF04151 PPC; PF09286 Pro-kuma_activ [H]
EC number: =3.4.21.101 [H]
Molecular weight: Translated: 68243; Mature: 68243
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQRPRYDFSCRPDFLACLPLVVAATLYAPLAQAASDWVPTHTAAFLVPTAPAANPASSL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHH LMQSLTASAVSAPAYRMKMNGAPALAGTRIAPLEISQPVRIAVTLKLRNQTQLDQLVSAV HHHHHHHHHHCCCCEEEEECCCCCCCCCEECCEECCCCEEEEEEEEECCCHHHHHHHHHH STPGNRDYGRFITRAEFQQRFAPLDTDAAAVASYLRSNGFSDIQVAPGNGIVTAVGNAST CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCHH VQAAFHARLKRFSYDGRTVYANDTGAFVPAKLGSVVDAIVGLQDVVRPKHLSSRIASDVA HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AQAADPTSRTETGTPVVHAVTDFAKIYGASHLPPATGTTVGIITWGDVSQTIADLKTFTA HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHH QAGLPTVDTLVVPGGEGTLADDGNPAEWNLDSQAIVGTSGGVKKLIFYSAINGDSEDSQL HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHH TEGRLVEAMYKAVTDNQAKIINVSLSLDETAENAAGVQAVTDELFKQAAVQGQIFSVASG HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHCCEEEEEECC DGGPYQAAVSPQGKSGAIGTFDGTTVTPTVDLTQYSVAWPANSPYVVAVGGTKLSTIGAT CCCCEEEEECCCCCCCCEECCCCCEECCEEECCEEEEECCCCCCEEEEECCCEEEECCCC HWAGETVWNDGLFYADLDGQGRPADNYVRLLATGSGISKFEDAPAWQTLALGSSFTRRAL CCCCCCEECCCEEEEECCCCCCCHHHEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHCC PDVSFAASRSSGAWIIVNGKAEMHAGTSLASPIFVGGFARVETAHDNAIGLPTPWLYANV CCCHHHCCCCCCEEEEECCCHHCCCCCCCCCCCEECCEEEEEECCCCCCCCCCHHHHHHH LRHHSTFRDVTEGNNGYQGHGYTAKAGWDNATGFGSLDFGKLSKVIEADSAH HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MQQRPRYDFSCRPDFLACLPLVVAATLYAPLAQAASDWVPTHTAAFLVPTAPAANPASSL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHH LMQSLTASAVSAPAYRMKMNGAPALAGTRIAPLEISQPVRIAVTLKLRNQTQLDQLVSAV HHHHHHHHHHCCCCEEEEECCCCCCCCCEECCEECCCCEEEEEEEEECCCHHHHHHHHHH STPGNRDYGRFITRAEFQQRFAPLDTDAAAVASYLRSNGFSDIQVAPGNGIVTAVGNAST CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCHH VQAAFHARLKRFSYDGRTVYANDTGAFVPAKLGSVVDAIVGLQDVVRPKHLSSRIASDVA HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AQAADPTSRTETGTPVVHAVTDFAKIYGASHLPPATGTTVGIITWGDVSQTIADLKTFTA HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHH QAGLPTVDTLVVPGGEGTLADDGNPAEWNLDSQAIVGTSGGVKKLIFYSAINGDSEDSQL HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHH TEGRLVEAMYKAVTDNQAKIINVSLSLDETAENAAGVQAVTDELFKQAAVQGQIFSVASG HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHCCEEEEEECC DGGPYQAAVSPQGKSGAIGTFDGTTVTPTVDLTQYSVAWPANSPYVVAVGGTKLSTIGAT CCCCEEEEECCCCCCCCEECCCCCEECCEEECCEEEEECCCCCCEEEEECCCEEEECCCC HWAGETVWNDGLFYADLDGQGRPADNYVRLLATGSGISKFEDAPAWQTLALGSSFTRRAL CCCCCCEECCCEEEEECCCCCCCHHHEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHCC PDVSFAASRSSGAWIIVNGKAEMHAGTSLASPIFVGGFARVETAHDNAIGLPTPWLYANV CCCHHHCCCCCCEEEEECCCHHCCCCCCCCCCCEECCEEEEEECCCCCCCCCCHHHHHHH LRHHSTFRDVTEGNNGYQGHGYTAKAGWDNATGFGSLDFGKLSKVIEADSAH HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8902622; 10488127 [H]