Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is (groL2 [H]
Identifier: 238025261
GI number: 238025261
Start: 2404595
End: 2406217
Strand: Reverse
Name: (groL2 [H]
Synonym: bglu_2g19330
Alternate gene names: 238025261
Gene position: 2406217-2404595 (Counterclockwise)
Preceding gene: 238025262
Following gene: 238025260
Centisome position: 85.11
GC content: 66.42
Gene sequence:
>1623_bases ATGAGTGCAAAAGACGTGAAATTCCATGACAGCGCGCGCGCCCGCATCGTCAAGGGCGTGAACGTGCTGGCCGACGCCGT CAAGGTCACGCTCGGTCCGAAGGGCCGCAACGTGCTGATCGAACGCAGTTTCGGCGCGCCGACGATGACGAAGGACGGCG TGTCGGTCGCCAAGGAAATCGAGCTGAAGGACCGCTTCGAGAACATGGGCGCCCAGGTGGTCAAGCAGGTCGCCTCGAAG ACGGCCGACGTGGCCGGCGACGGCACGACGACGGCCACGGTGCTTGCGCAGGCGATCGTGCAGGAGGGCATGAAGCACGT CGCCGCCGGCATGAATCCGATGGACCTGAAGCGCGGCATCGACAAGGCGGTGGGCGCCGTGCTCGACCAGCTGCGCACCT TGTCCAAGCCGATCTCGACCAACAAGGAAATCGCCCAGGTCGGCTCGATCTCGGCGAACTCGGACGAGGCGATCGGCAAG ATCATCGCCGACGCGATGGAGAAGGTCGGCAAGGAGGGCGTCATCACGGTGGAGGATGGCAAGTCGCTCGACAACGAACT CGACGTCGTGGAGGGCATGCAGTTCGACCGCGGCTATCTGAGCCCGTACTTCATCAACGACCCGGAAAAGCAGGCGGCCT ACCTCGACGATGCGCTGATCCTGCTGCACGACAAGAAGATTTCCGCGGTTCGCGACCTGCTGCCGATCCTCGAGGTGGCC GCCAAGGCCGGCAAGCCGCTGCTGATCGTGGCCGAGGACATCGAGGGCGAAGCGCTGGCCACCCTGGTGGTCAACGCGAT GCGCGGCATCCTGAAGGTGGTGGCCGTGAAGGCGCCGGGCTTCGGCGATCGCCGCAAGGCGATGCTCGAGGATATCGCCA TCCTCACGGGCGCCACGGTGATTGCGGAAGAGACCGGCAAGCAGCTCGAAAAAGCCACGCTCGAGGACCTGGGGCAAGCC AAGCGAGTGGAAGTCCGCAAGGAGGACACGATCATCATCGACGGCGCGGGCGAGGCGAAGCGCATCGAGGCCCGGGTCAA GCAGATCCGCGCGCAGATCGACGAGGCCACCTCCGACTACGACCGGGAAAAGCTGCAGGAGCGGCTTGCCAAGCTCGCGG GCGGCGTGGCGGTCATCAAGGTCGGTGCGGCGACCGAGGTCGAGATGAAGGAGAAGAAGGATCGCGTCGACGACGCGTTG CACGCGACGCGCGCGGCCGTCGAGGAAGGCATCGTGCCGGGCGGCGGGGTGGCGCTGCTGCGGGCTCGCGCCGCGCTGTC CGGCCTGAAGGGCGCGAACGCCGACCAGGACGCGGGCATTCAGATCGTGCTGCGCGCGCTGGAAGCGCCGCTGCGCGTCA TCGTGTCGAACGCCGGCGACGAACCGGCGGTCGTGATCGCCAAGGTGCTCGAAGGCAAGGGCAATTTCGGCTACAACGCG GCCAGCGGCGAATATGGTGACCTGGTGGAAACCGGCGTGGTGGATCCGACCAAGGTGACGCGCACCGCGCTGCAGAACGC AGCCTCGATCGCCGGTCTGATCCTGACGACCGACGCCACTGTCGCGGAAGCGCCGAAGGACGAGAAGCCGGTGCCGGCGG CCGCGCCCGAGATGGACTATTGA
Upstream 100 bases:
>100_bases AGCCGGTTCGGGTCGCGCACGGCGTGCTCGCCTCGTTGGCCACGCTGTTCGCGACGTGTCGAGTCGACACTGAGTCAAGG ACTTTTCCCGGAGCAACGAC
Downstream 100 bases:
>100_bases CGGGCGGCCCGGGCCGATCTGGCCCGAGGCGATGCCGGGCCGGGGCAACCGCCTCGCCGGCCCGGCGCCCTCGCCCGCGC GCCGGCCTGCCACCCGAGCC
Product: chaperonin GroEL
Products: NA
Alternate protein names: GroEL protein 2; Protein Cpn60 2 [H]
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MSAKDVKFHDSARARIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTMTKDGVSVAKEIELKDRFENMGAQVVKQVASK TADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDQLRTLSKPISTNKEIAQVGSISANSDEAIGK IIADAMEKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINDPEKQAAYLDDALILLHDKKISAVRDLLPILEVA AKAGKPLLIVAEDIEGEALATLVVNAMRGILKVVAVKAPGFGDRRKAMLEDIAILTGATVIAEETGKQLEKATLEDLGQA KRVEVRKEDTIIIDGAGEAKRIEARVKQIRAQIDEATSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVDDAL HATRAAVEEGIVPGGGVALLRARAALSGLKGANADQDAGIQIVLRALEAPLRVIVSNAGDEPAVVIAKVLEGKGNFGYNA ASGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKDEKPVPAAAPEMDY
Sequences:
>Translated_540_residues MSAKDVKFHDSARARIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTMTKDGVSVAKEIELKDRFENMGAQVVKQVASK TADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDQLRTLSKPISTNKEIAQVGSISANSDEAIGK IIADAMEKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINDPEKQAAYLDDALILLHDKKISAVRDLLPILEVA AKAGKPLLIVAEDIEGEALATLVVNAMRGILKVVAVKAPGFGDRRKAMLEDIAILTGATVIAEETGKQLEKATLEDLGQA KRVEVRKEDTIIIDGAGEAKRIEARVKQIRAQIDEATSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVDDAL HATRAAVEEGIVPGGGVALLRARAALSGLKGANADQDAGIQIVLRALEAPLRVIVSNAGDEPAVVIAKVLEGKGNFGYNA ASGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKDEKPVPAAAPEMDY >Mature_539_residues SAKDVKFHDSARARIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTMTKDGVSVAKEIELKDRFENMGAQVVKQVASKT ADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDQLRTLSKPISTNKEIAQVGSISANSDEAIGKI IADAMEKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINDPEKQAAYLDDALILLHDKKISAVRDLLPILEVAA KAGKPLLIVAEDIEGEALATLVVNAMRGILKVVAVKAPGFGDRRKAMLEDIAILTGATVIAEETGKQLEKATLEDLGQAK RVEVRKEDTIIIDGAGEAKRIEARVKQIRAQIDEATSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVDDALH ATRAAVEEGIVPGGGVALLRARAALSGLKGANADQDAGIQIVLRALEAPLRVIVSNAGDEPAVVIAKVLEGKGNFGYNAA SGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKDEKPVPAAAPEMDY
Specific function: Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chaperonin (HSP60) family [H]
Homologues:
Organism=Homo sapiens, GI41399285, Length=528, Percent_Identity=53.7878787878788, Blast_Score=562, Evalue=1e-160, Organism=Homo sapiens, GI31542947, Length=528, Percent_Identity=53.7878787878788, Blast_Score=562, Evalue=1e-160, Organism=Escherichia coli, GI1790586, Length=528, Percent_Identity=72.1590909090909, Blast_Score=767, Evalue=0.0, Organism=Caenorhabditis elegans, GI17555558, Length=529, Percent_Identity=53.3081285444234, Blast_Score=561, Evalue=1e-160, Organism=Caenorhabditis elegans, GI193210679, Length=211, Percent_Identity=54.0284360189574, Blast_Score=224, Evalue=1e-58, Organism=Caenorhabditis elegans, GI17564182, Length=553, Percent_Identity=24.0506329113924, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323288, Length=526, Percent_Identity=53.8022813688213, Blast_Score=566, Evalue=1e-162, Organism=Saccharomyces cerevisiae, GI6322524, Length=537, Percent_Identity=24.2085661080074, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI24641193, Length=527, Percent_Identity=55.2182163187856, Blast_Score=583, Evalue=1e-166, Organism=Drosophila melanogaster, GI24641191, Length=527, Percent_Identity=55.2182163187856, Blast_Score=583, Evalue=1e-166, Organism=Drosophila melanogaster, GI45550936, Length=527, Percent_Identity=53.3206831119545, Blast_Score=563, Evalue=1e-160, Organism=Drosophila melanogaster, GI45550132, Length=527, Percent_Identity=53.3206831119545, Blast_Score=563, Evalue=1e-160, Organism=Drosophila melanogaster, GI45550935, Length=527, Percent_Identity=53.3206831119545, Blast_Score=563, Evalue=1e-160, Organism=Drosophila melanogaster, GI17864606, Length=530, Percent_Identity=45.6603773584906, Blast_Score=479, Evalue=1e-135, Organism=Drosophila melanogaster, GI24584129, Length=531, Percent_Identity=40.1129943502825, Blast_Score=366, Evalue=1e-101, Organism=Drosophila melanogaster, GI19921262, Length=531, Percent_Identity=40.1129943502825, Blast_Score=366, Evalue=1e-101,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018370 - InterPro: IPR001844 - InterPro: IPR002423 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 56965; Mature: 56834
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00296 CHAPERONINS_CPN60
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKDVKFHDSARARIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTMTKDGVSVAKEI CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCCCCHHHHHHH ELKDRFENMGAQVVKQVASKTADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DKAVGAVLDQLRTLSKPISTNKEIAQVGSISANSDEAIGKIIADAMEKVGKEGVITVEDG HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC KSLDNELDVVEGMQFDRGYLSPYFINDPEKQAAYLDDALILLHDKKISAVRDLLPILEVA CCCCCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHH AKAGKPLLIVAEDIEGEALATLVVNAMRGILKVVAVKAPGFGDRRKAMLEDIAILTGATV HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHH IAEETGKQLEKATLEDLGQAKRVEVRKEDTIIIDGAGEAKRIEARVKQIRAQIDEATSDY HHHHHHHHHHHHHHHHHCCHHHEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCHH DREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RARAALSGLKGANADQDAGIQIVLRALEAPLRVIVSNAGDEPAVVIAKVLEGKGNFGYNA HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC ASGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKDEKPVPAAAPEMDY CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SAKDVKFHDSARARIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTMTKDGVSVAKEI CCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCCCCHHHHHHH ELKDRFENMGAQVVKQVASKTADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DKAVGAVLDQLRTLSKPISTNKEIAQVGSISANSDEAIGKIIADAMEKVGKEGVITVEDG HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC KSLDNELDVVEGMQFDRGYLSPYFINDPEKQAAYLDDALILLHDKKISAVRDLLPILEVA CCCCCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHH AKAGKPLLIVAEDIEGEALATLVVNAMRGILKVVAVKAPGFGDRRKAMLEDIAILTGATV HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHH IAEETGKQLEKATLEDLGQAKRVEVRKEDTIIIDGAGEAKRIEARVKQIRAQIDEATSDY HHHHHHHHHHHHHHHHHCCHHHEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCHH DREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH RARAALSGLKGANADQDAGIQIVLRALEAPLRVIVSNAGDEPAVVIAKVLEGKGNFGYNA HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC ASGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKDEKPVPAAAPEMDY CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA