Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025140
Identifier: 238025140
GI number: 238025140
Start: 2255339
End: 2256790
Strand: Reverse
Name: 238025140
Synonym: bglu_2g18050
Alternate gene names: NA
Gene position: 2256790-2255339 (Counterclockwise)
Preceding gene: 238025141
Following gene: 238025139
Centisome position: 79.82
GC content: 71.07
Gene sequence:
>1452_bases ATGACAAGCCTCGCCGACACCACGATCGATCACGGCCGTCTGGCCGATTTCATCGAGCGCAAATGGAACGATGAGATCGT TCACGAGCTGACCGCCTACATCGCGATTCCGGCCAAGAGCCCGGCGTTCGACGCCGACTGGCAGCAGCGCGGCCTGCTCG AACGCGTGGTGGTGGACGCCGCGCAGTGGGCCGCGCGCCAGCCGGTGCGCGGCCTCACGCTCGAGATCGTCCGGCTGCCG GGCCGCACGCCGGTGATCTTCTTCGACGCGCCGGCCACGCGCTCGGGCACCACTGAAACGATTCTGCTCTACGGCCATCT CGACAAGCAGCCCGAATTCGACGGCTGGCGCGCCGACCTGGGCCCGTGGACGCCGAAGTACGAGGGCGGCAAGCTCTACG GCCGGGGCGGCGCCGACGACGGCTATGCGATCTACGCGAGCCTGACGGCGCTGGCCGCGCTCGATGCGCAGGGCATCGAG CGCCCGCGTTGCGTGGGCCTGATCGAGACCTGCGAGGAATCGGGCAGCTTCGACCTGCTGCCCTACGTCGATGCGCTGCG CGACCGGCTCGGCAAGGTCGGCCTGGTGGTCTGCCTCGATTCGGGCGCCGGCAACTACGACCAGCTGTGGCTGACCACCT CGCTGCGCGGCCTCGTGTCCGGCGAACTGCAGGTGGAGGTGCTCGACGAAGGGCTGCATTCGGGCGTGTTCGGCGGCATC GCGCCGTCGAGCTTCCGGATCATGCGGCAGCTGTTCGAGCGGCTCGAGGACGCCTCGAGCGGCAGCCTGCTGCCGCGCGT GTTTCATTGCGAGGTGCCGGCCGGCCGCGTGCGCGAGACCGAGGCGGCCGCGGCCATCCTCGGCGACCTGGTCTGGAAGG GGCTGCCCTGGGCCTGCGGCCAGGACGGCCGCCCGGTGCTGCCCACCACCACCGATCCGCGCGAGGCGCTGCTCAATTCG ACCTGGCGGCCCTCGCTGGCCGTGACCGGCGCGGGCGGCCTGCCGCCGCTCGACAACGCCGGCAACGTGCTGCGGCCGAG GACGGCGTTCAAGCTGTCGCTGCGGCTGCCGCCGCTCGTCGACGCGGCGCAGGCGGTGCAGGAGTTGAAGCGCCTGCTCG AACTCGATCCGCCCTACAACGCGAAGGTCACGTTCAAGCCCGACTCCGGCGCGGCCACCGGCTGGAACGCGCCCGAGCTC GCGCCGTGGCTGGCCGCGTCGCTCGACCAGGCGTCGCGCCGCCACTTCGGCGCCGACTGCGCCTACATGGGCCTGGGCGG CACGATTCCGCTGATGAACGTGCTGCAGGCCGGGTTCCCGGCCGCGCAGTTCATGGTGTGCGGCGTGCTGGGGCCGAAAT CGAACGCGCACGGGCCGAATGAGTTCCTGCACGTGCCGTATGCCAAGAAGCTGACGGCGGCCGTGGCCGACGTGATCGCC GCCACGCGCTGA
Upstream 100 bases:
>100_bases CCCTTCGTCGCCGGCTGCGCCGGCGCGCCCGATGCCGGCGCGCTTGCGCGCGCATCGGCGCTATCATCGACGCTTCGTCT TCACCGATTCCGACACGATC
Downstream 100 bases:
>100_bases GCGGCGCAGCCGGGGACTAGTGGGCCGGGCGGCGTTGCAGGGCTAGTGCGGCGCGCCTGCCGCTACAATGCGGTCCTCGC ATTCGATGGAGCATCGACCA
Product: acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like deacylase
Products: NA
Alternate protein names: Peptidase; M20/M25/M40 Family Peptidase; Succinyl-Diaminopimelate Desuccinylase; Peptidase Family; ArgE/DapE/Acy1 Family Protein; Peptidase Dimerization Domain Protein; Beta-Ala-His Dipeptidase; M20 Family Peptidase; Succinyl-Diaminopimelate Desuccinylase Protein; Zinc Metallopeptidase; N-Acyl-L-Amino Acid Amidohydrolase; Peptidase Dimerisation Domain-Containing Protein; Peptidase Or Deacetlylase Family Protein; Acetylornithine Deacetylase ArgE; Metallopeptidase; Thiol Dipeptidase; Peptidase Dimerisation; Peptidase Dimerisation Domain Protein
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MTSLADTTIDHGRLADFIERKWNDEIVHELTAYIAIPAKSPAFDADWQQRGLLERVVVDAAQWAARQPVRGLTLEIVRLP GRTPVIFFDAPATRSGTTETILLYGHLDKQPEFDGWRADLGPWTPKYEGGKLYGRGGADDGYAIYASLTALAALDAQGIE RPRCVGLIETCEESGSFDLLPYVDALRDRLGKVGLVVCLDSGAGNYDQLWLTTSLRGLVSGELQVEVLDEGLHSGVFGGI APSSFRIMRQLFERLEDASSGSLLPRVFHCEVPAGRVRETEAAAAILGDLVWKGLPWACGQDGRPVLPTTTDPREALLNS TWRPSLAVTGAGGLPPLDNAGNVLRPRTAFKLSLRLPPLVDAAQAVQELKRLLELDPPYNAKVTFKPDSGAATGWNAPEL APWLAASLDQASRRHFGADCAYMGLGGTIPLMNVLQAGFPAAQFMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVADVIA ATR
Sequences:
>Translated_483_residues MTSLADTTIDHGRLADFIERKWNDEIVHELTAYIAIPAKSPAFDADWQQRGLLERVVVDAAQWAARQPVRGLTLEIVRLP GRTPVIFFDAPATRSGTTETILLYGHLDKQPEFDGWRADLGPWTPKYEGGKLYGRGGADDGYAIYASLTALAALDAQGIE RPRCVGLIETCEESGSFDLLPYVDALRDRLGKVGLVVCLDSGAGNYDQLWLTTSLRGLVSGELQVEVLDEGLHSGVFGGI APSSFRIMRQLFERLEDASSGSLLPRVFHCEVPAGRVRETEAAAAILGDLVWKGLPWACGQDGRPVLPTTTDPREALLNS TWRPSLAVTGAGGLPPLDNAGNVLRPRTAFKLSLRLPPLVDAAQAVQELKRLLELDPPYNAKVTFKPDSGAATGWNAPEL APWLAASLDQASRRHFGADCAYMGLGGTIPLMNVLQAGFPAAQFMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVADVIA ATR >Mature_482_residues TSLADTTIDHGRLADFIERKWNDEIVHELTAYIAIPAKSPAFDADWQQRGLLERVVVDAAQWAARQPVRGLTLEIVRLPG RTPVIFFDAPATRSGTTETILLYGHLDKQPEFDGWRADLGPWTPKYEGGKLYGRGGADDGYAIYASLTALAALDAQGIER PRCVGLIETCEESGSFDLLPYVDALRDRLGKVGLVVCLDSGAGNYDQLWLTTSLRGLVSGELQVEVLDEGLHSGVFGGIA PSSFRIMRQLFERLEDASSGSLLPRVFHCEVPAGRVRETEAAAAILGDLVWKGLPWACGQDGRPVLPTTTDPREALLNST WRPSLAVTGAGGLPPLDNAGNVLRPRTAFKLSLRLPPLVDAAQAVQELKRLLELDPPYNAKVTFKPDSGAATGWNAPELA PWLAASLDQASRRHFGADCAYMGLGGTIPLMNVLQAGFPAAQFMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVADVIAA TR
Specific function: Unknown
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21071039, Length=437, Percent_Identity=28.8329519450801, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI271398239, Length=461, Percent_Identity=26.8980477223427, Blast_Score=96, Evalue=8e-20, Organism=Caenorhabditis elegans, GI193211059, Length=400, Percent_Identity=26.5, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563146, Length=383, Percent_Identity=27.154046997389, Blast_Score=93, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6321159, Length=385, Percent_Identity=25.1948051948052, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24585880, Length=383, Percent_Identity=27.4151436031332, Blast_Score=96, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52051; Mature: 51920
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLADTTIDHGRLADFIERKWNDEIVHELTAYIAIPAKSPAFDADWQQRGLLERVVVDA CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHH AQWAARQPVRGLTLEIVRLPGRTPVIFFDAPATRSGTTETILLYGHLDKQPEFDGWRADL HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCC GPWTPKYEGGKLYGRGGADDGYAIYASLTALAALDAQGIERPRCVGLIETCEESGSFDLL CCCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH PYVDALRDRLGKVGLVVCLDSGAGNYDQLWLTTSLRGLVSGELQVEVLDEGLHSGVFGGI HHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEHHHHHHCCCEEEEEEHHHHHCCCCCCC APSSFRIMRQLFERLEDASSGSLLPRVFHCEVPAGRVRETEAAAAILGDLVWKGLPWACG CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC QDGRPVLPTTTDPREALLNSTWRPSLAVTGAGGLPPLDNAGNVLRPRTAFKLSLRLPPLV CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHH DAAQAVQELKRLLELDPPYNAKVTFKPDSGAATGWNAPELAPWLAASLDQASRRHFGADC HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE AYMGLGGTIPLMNVLQAGFPAAQFMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVADVIA EEECCCCCHHHHHHHHCCCCHHHHHEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHH ATR CCC >Mature Secondary Structure TSLADTTIDHGRLADFIERKWNDEIVHELTAYIAIPAKSPAFDADWQQRGLLERVVVDA CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHH AQWAARQPVRGLTLEIVRLPGRTPVIFFDAPATRSGTTETILLYGHLDKQPEFDGWRADL HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCC GPWTPKYEGGKLYGRGGADDGYAIYASLTALAALDAQGIERPRCVGLIETCEESGSFDLL CCCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH PYVDALRDRLGKVGLVVCLDSGAGNYDQLWLTTSLRGLVSGELQVEVLDEGLHSGVFGGI HHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEHHHHHHCCCEEEEEEHHHHHCCCCCCC APSSFRIMRQLFERLEDASSGSLLPRVFHCEVPAGRVRETEAAAAILGDLVWKGLPWACG CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC QDGRPVLPTTTDPREALLNSTWRPSLAVTGAGGLPPLDNAGNVLRPRTAFKLSLRLPPLV CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHH DAAQAVQELKRLLELDPPYNAKVTFKPDSGAATGWNAPELAPWLAASLDQASRRHFGADC HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE AYMGLGGTIPLMNVLQAGFPAAQFMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVADVIA EEECCCCCHHHHHHHHCCCCHHHHHEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHH ATR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA