Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025069
Identifier: 238025069
GI number: 238025069
Start: 2163089
End: 2163793
Strand: Reverse
Name: 238025069
Synonym: bglu_2g17250
Alternate gene names: NA
Gene position: 2163793-2163089 (Counterclockwise)
Preceding gene: 238025073
Following gene: 238025068
Centisome position: 76.53
GC content: 71.91
Gene sequence:
>705_bases ATGTCAAATAGCGAAATGGAGAAACCCCTCGAAACTGCGGACCAGGGGCGTCCCTACGGCGGGGTGGCCCGCGCGGCGCG CGACGCGGAGCGCCGCGCCGCGCTGATCGACGCCGGCACCCGGCTGTTCGGTTCGCAGGGCTTTCGCAGGACCACGGTGC GTGCGATCTGCCGCGAGGCGCGGCTCAACGACCGCTATTTCTACGCGGCGTTCGCGAATACCGAGGCGCTGCTGCAGGCG ACCTACCAGCATCATGCGCAGCGCCTGCGCGAGGCGATCGGCGCGGCGCTCGACGGTGCCGGCGAGCGCCTCGACGCGCG TGTCGAGGCGGGGCTGCGCGCGTTCTTCGCGTTCCTGCGCGACACTTGCGCTGCGCGCGTGCTGCTGCTGGAGGTGATCG GCGTGAGCGCCGAGACCGACGCCACCTACCAGCGCAACCTGCTTGAATTCGGCCGGCAGATCGTTGCGCTCGCGCGCGCG GGCGACAGCGAGGACCCCGAGCAGCGCGCCGACGCGCGGCTGACCGGGCTCGCGCTGGTGGGCGCGATGACGAACGCCGG CACGGCCTGGCTGCTGACCGGCTATCGCGATCCGGAGGCGCGCATGGTGCGCAATTGCCGCCGCGTGCTGCTCGGCACGC TGGCGATGTTCGATGCCGACTGCAGTGCGGCGCGGGCCGACGCCGACGCACATGTCGGCGCCTGA
Upstream 100 bases:
>100_bases GAAAAATCCTTCATCGACGCTCCTTGCGGGCTTGCCGCCCGGCCGAAACACGGATTAAATGTGGTGTTGAGTGTCACCAA TTTAATGATGCCATTGTTTG
Downstream 100 bases:
>100_bases GGCGGCCGGCGTGCCTCGCATGGCCTCGTATGAGGTGAAAGTGCTGTGGCAATGGCCCGAAATCCATCCAGTGCGGCATC GCGCGGCCGATCGCGCCGGA
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Egulator TetR Family; Regulatory Protein TetR; TetR-Family Regulatory Protein; Tetr Family Transcriptional Regulator
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MSNSEMEKPLETADQGRPYGGVARAARDAERRAALIDAGTRLFGSQGFRRTTVRAICREARLNDRYFYAAFANTEALLQA TYQHHAQRLREAIGAALDGAGERLDARVEAGLRAFFAFLRDTCAARVLLLEVIGVSAETDATYQRNLLEFGRQIVALARA GDSEDPEQRADARLTGLALVGAMTNAGTAWLLTGYRDPEARMVRNCRRVLLGTLAMFDADCSAARADADAHVGA
Sequences:
>Translated_234_residues MSNSEMEKPLETADQGRPYGGVARAARDAERRAALIDAGTRLFGSQGFRRTTVRAICREARLNDRYFYAAFANTEALLQA TYQHHAQRLREAIGAALDGAGERLDARVEAGLRAFFAFLRDTCAARVLLLEVIGVSAETDATYQRNLLEFGRQIVALARA GDSEDPEQRADARLTGLALVGAMTNAGTAWLLTGYRDPEARMVRNCRRVLLGTLAMFDADCSAARADADAHVGA >Mature_233_residues SNSEMEKPLETADQGRPYGGVARAARDAERRAALIDAGTRLFGSQGFRRTTVRAICREARLNDRYFYAAFANTEALLQAT YQHHAQRLREAIGAALDGAGERLDARVEAGLRAFFAFLRDTCAARVLLLEVIGVSAETDATYQRNLLEFGRQIVALARAG DSEDPEQRADARLTGLALVGAMTNAGTAWLLTGYRDPEARMVRNCRRVLLGTLAMFDADCSAARADADAHVGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25455; Mature: 25324
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSEMEKPLETADQGRPYGGVARAARDAERRAALIDAGTRLFGSQGFRRTTVRAICREA CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH RLNDRYFYAAFANTEALLQATYQHHAQRLREAIGAALDGAGERLDARVEAGLRAFFAFLR HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DTCAARVLLLEVIGVSAETDATYQRNLLEFGRQIVALARAGDSEDPEQRADARLTGLALV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH GAMTNAGTAWLLTGYRDPEARMVRNCRRVLLGTLAMFDADCSAARADADAHVGA HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC >Mature Secondary Structure SNSEMEKPLETADQGRPYGGVARAARDAERRAALIDAGTRLFGSQGFRRTTVRAICREA CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH RLNDRYFYAAFANTEALLQATYQHHAQRLREAIGAALDGAGERLDARVEAGLRAFFAFLR HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DTCAARVLLLEVIGVSAETDATYQRNLLEFGRQIVALARAGDSEDPEQRADARLTGLALV HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH GAMTNAGTAWLLTGYRDPEARMVRNCRRVLLGTLAMFDADCSAARADADAHVGA HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA