| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is sfiIM [H]
Identifier: 238024955
GI number: 238024955
Start: 2032497
End: 2033639
Strand: Direct
Name: sfiIM [H]
Synonym: bglu_2g16100
Alternate gene names: 238024955
Gene position: 2032497-2033639 (Clockwise)
Preceding gene: 238024954
Following gene: 238024956
Centisome position: 71.89
GC content: 52.93
Gene sequence:
>1143_bases GTGAGTGATGGAATCATTGAGGCGGTGAGCGGCGTATCGAACCGCAAGCAGAAAGTAAGCGATCGCCGCATGGTATCGCA CGATATCGCGTCAAAAGACTTTGGCGAGGCTTTCGCTTCCTACGAACAGGAGGTGACCACTAATCCGTTATTGCTCAACG GTGATGCGCTCAACGTGCTCCAAGCGCTTCCTGACGAATGCATCGACTGTGCGATGACCTCCCCGCCTTACTGGGGTAAG CGTGAATATGAGAACGGCGGCATCGGTTTGGAAGCAGACTACCGCGACTTCGTCCGCGACCTCGCTGCAATATTCCTTGA GCTCAAAAGGGTTCTAAAACCGACTGGATCATTCTGGCTCAACCTCGGCGATACATACGATGGCAAAGGACTTCTCGGTA TTCCTTGGCGGGTTGCCTTCGAGCTAACAGACAACCAAGGTTGGACTATGCGCAACAGCGTAGTCTGGAACAAGTTGAAG GGAGGCATGGACAACAGCAAGGACCGCCTAGCTAACGTTCACGAAAACCTATTTCACTTTGTGAAGAAAGCTAAGGGCTA TTACTACAACGCTGACGCAATCCGTTCGAAGCCACGCGAGGCGAAAGTTGTGAATGGCGCCGTCATCTCCGCCACCGGGG TTTCTGGAGTTCGGTACAAGCGACAGATTGAATTGTCTACGGCCCTTGACGACAATGAGAAGAAGGCTGCTTTCGCCGCA CTTGATTCGATGCTTGCCGATCTTGCGGCGGGCAATGTCTCAGACTTCCGAATGATCATTCGCGGTCAACAGCGTGCGAC CCATTCTGATAGCGAAAAGGTCTCGGGGCGAGCTAAGGAACTCCGGGATAAGGGCTTCTACTTTCTCAAATACCATCCCA ATGGCAGTAAGCCGGGCGACGTGTGGGACATAATTCCCGAGGATACGCAACGGCGCGGCACACATTTTGCTCCTTATCCT GTGGACCTTTGCCGTAGACCGTTACTCGCAACATGCCCACCGCGAGGCGTAGTTCTTGATCCCTTCTGCGGAACTGGGAC AACCCTTCTCGCCGCACGTCAGATTGGCCTTAAGTCAATCGGAATCGATATTTCGCGCCAATACCTCGAACTATCACAAG AAAGATGCAACAGCCTTCTATGA
Upstream 100 bases:
>100_bases AATCAGTGACAGGTGGTCGCCCGAGCGCTCAAATTTAAACGCTTCTACTTTACTTACAACTCTCGGCTTAACTGGCCGCA CGCAAAGTCAGGAATTTTTA
Downstream 100 bases:
>100_bases GCAAAGTTGTTGAGTTATTCGGCAAAGCAGTGGACGCTCCGGGAATTGAGTGGCAAAAGACAATTGCCGAGCAGGGTTGC CCATTCTTGGCCAAGCGATG
Product: DNA methyltransferase
Products: NA
Alternate protein names: M.SfiI; N-4 cytosine-specific methyltransferase SfiI [H]
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSDGIIEAVSGVSNRKQKVSDRRMVSHDIASKDFGEAFASYEQEVTTNPLLLNGDALNVLQALPDECIDCAMTSPPYWGK REYENGGIGLEADYRDFVRDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNKLK GGMDNSKDRLANVHENLFHFVKKAKGYYYNADAIRSKPREAKVVNGAVISATGVSGVRYKRQIELSTALDDNEKKAAFAA LDSMLADLAAGNVSDFRMIIRGQQRATHSDSEKVSGRAKELRDKGFYFLKYHPNGSKPGDVWDIIPEDTQRRGTHFAPYP VDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSIGIDISRQYLELSQERCNSLL
Sequences:
>Translated_380_residues MSDGIIEAVSGVSNRKQKVSDRRMVSHDIASKDFGEAFASYEQEVTTNPLLLNGDALNVLQALPDECIDCAMTSPPYWGK REYENGGIGLEADYRDFVRDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNKLK GGMDNSKDRLANVHENLFHFVKKAKGYYYNADAIRSKPREAKVVNGAVISATGVSGVRYKRQIELSTALDDNEKKAAFAA LDSMLADLAAGNVSDFRMIIRGQQRATHSDSEKVSGRAKELRDKGFYFLKYHPNGSKPGDVWDIIPEDTQRRGTHFAPYP VDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSIGIDISRQYLELSQERCNSLL >Mature_379_residues SDGIIEAVSGVSNRKQKVSDRRMVSHDIASKDFGEAFASYEQEVTTNPLLLNGDALNVLQALPDECIDCAMTSPPYWGKR EYENGGIGLEADYRDFVRDLAAIFLELKRVLKPTGSFWLNLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNKLKG GMDNSKDRLANVHENLFHFVKKAKGYYYNADAIRSKPREAKVVNGAVISATGVSGVRYKRQIELSTALDDNEKKAAFAAL DSMLADLAAGNVSDFRMIIRGQQRATHSDSEKVSGRAKELRDKGFYFLKYHPNGSKPGDVWDIIPEDTQRRGTHFAPYPV DLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSIGIDISRQYLELSQERCNSLL
Specific function: This methylase recognizes the double-stranded sequence GGCCNNNNNGGCC, causes specific methylation on C-? on both strands, and protects the DNA from cleavage by the SfiI endonuclease [H]
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR017985 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.113 [H]
Molecular weight: Translated: 42276; Mature: 42145
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDGIIEAVSGVSNRKQKVSDRRMVSHDIASKDFGEAFASYEQEVTTNPLLLNGDALNVL CCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCHHHHHH QALPDECIDCAMTSPPYWGKREYENGGIGLEADYRDFVRDLAAIFLELKRVLKPTGSFWL HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE NLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNKLKGGMDNSKDRLANVHENLFHF ECCCCCCCCEEEECCEEEEEEEECCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VKKAKGYYYNADAIRSKPREAKVVNGAVISATGVSGVRYKRQIELSTALDDNEKKAAFAA HHHHCCCEECCHHHHCCCCHHEEECCEEEEECCCCCCEEEEEEEEHHCCCCCHHHHHHHH LDSMLADLAAGNVSDFRMIIRGQQRATHSDSEKVSGRAKELRDKGFYFLKYHPNGSKPGD HHHHHHHHHCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCC VWDIIPEDTQRRGTHFAPYPVDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSI EEECCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHHH GIDISRQYLELSQERCNSLL CCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDGIIEAVSGVSNRKQKVSDRRMVSHDIASKDFGEAFASYEQEVTTNPLLLNGDALNVL CCCHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCHHHHHH QALPDECIDCAMTSPPYWGKREYENGGIGLEADYRDFVRDLAAIFLELKRVLKPTGSFWL HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE NLGDTYDGKGLLGIPWRVAFELTDNQGWTMRNSVVWNKLKGGMDNSKDRLANVHENLFHF ECCCCCCCCEEEECCEEEEEEEECCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VKKAKGYYYNADAIRSKPREAKVVNGAVISATGVSGVRYKRQIELSTALDDNEKKAAFAA HHHHCCCEECCHHHHCCCCHHEEECCEEEEECCCCCCEEEEEEEEHHCCCCCHHHHHHHH LDSMLADLAAGNVSDFRMIIRGQQRATHSDSEKVSGRAKELRDKGFYFLKYHPNGSKPGD HHHHHHHHHCCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCC VWDIIPEDTQRRGTHFAPYPVDLCRRPLLATCPPRGVVLDPFCGTGTTLLAARQIGLKSI EEECCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCHHHH GIDISRQYLELSQERCNSLL CCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA