Click here to switch to the map view.

The map label for this gene is rpoD [H]

Identifier: 238024932

GI number: 238024932

Start: 2004694

End: 2007111

Strand: Reverse

Name: rpoD [H]

Synonym: bglu_2g15870

Alternate gene names: 238024932

Gene position: 2007111-2004694 (Counterclockwise)

Preceding gene: 238024933

Following gene: 238024930

Centisome position: 70.99

GC content: 63.4

Gene sequence:

>2418_bases
ATGGCAAAGACGGCAGGCGGGAAGACAGCAGTGGGCAAGGGCTCCGACGAGCCGACCTCCAAGGTCACGAAGGCCCGATC
TGCTGGTTCCGCGAAGTCGGTGTCCGGCGCGTCGCCCGCTGGCAGGAAACGCACCGTGGCCGGCACCGCGAAGGCTGCGC
CGGCACCGACGGTTCGTGCATCACGGGCCGTCGCGAAATCCGAATCGCATGCGGCGGCAAGGCCGCCGGCGGAGCGGATC
AGTGCGAATAGCGCAAGGGCAGCGGCTGCCGCCGCGGACGAAACGGCAGTACGCACTACTCAAGCATCCACGGTTCAACA
GGCTGTTGTCCAGCAGCCGCGAGTCGAATTAGCCGGTACGGCGAACTCCATGACGAAAAAGCTGAACGAAGTATCCGTCG
ATGACGACGCAACCCAGAGCGAAGAGCAGCCGACGGCCGCTGCAGCGGGCAAGGAAAAGACGACCAAGGCGCGCGACCGC
CGCGCGAAGGAAAAGCTGCTGCTGAAGGAAGCGTTCGCGTCGAGCCAACCCGGCACCGCCGAGGAGCTCGAGGAGCGGCG
CGTGAAGCTGCGTGCGCTCATCAAGCTGGGCAAGGAGCGCGGCTTCCTGACCTATGCCGAAATCAACGACCACCTGCCCG
ACAACTTCACGGAAACGGAAGCGCTGGAAGGCATCATCGGCACGTTCAACGACATGGGCGTGGCGGTGTACGAGCAGGCG
CCCGACGCGGAAACGCTGCTGCTCAACGATAACGCGCCCGCCGCTTCGTCGGACGACGAAGTCGAGGAAGAAGCCGAAGT
CGCGCTGTCGACCGTCGATTCCGAGTTCGGTCGCACGACCGACCCGGTGCGGATGTACATGCGCGAGATGGGCACGGTCG
AGCTGCTCACGCGTGAAGGCGAAATCGAGATCGCGAAGCGTATCGAGGACGGCCTGCGCCACATGGTGATGGCGATTTCC
GCGTGCCCGACCACGATCGCTGACATCCTCGCGATGGCCGAGCGCGTTGCCAACGACGAGATTCGTGTGGACGAACTCGT
TGACGGCCTGCTCGATCCGAACGCAGAGGACACCGACGGCTTCAACGCGAAGGAAGCGGAAGAGGCCGAGGAAGCCGAGG
AGGAAGAAGAGGAGGCGAACGAGGACGAGGAAGAGGAGGACGACGACGGCGCCGCCCAGGCCACCGCCAACGCCGCCCAG
CTCGAAGCGCTCAAGCGCGCCTCGCTCGAGAAGTTCGCGCTGATCAGCGAGTGGTTCGACAAGATGCGTCGTGCGTTCGA
GAAGGAGGGCTACAAGTCGAAGTCCTACCTGAAGGCGCAGGAAACCATCCAGAACGAACTGATGTCGATCCGCTTCACCG
CGCGCACCGTCGAGCGTCTGTGCGACACGCTGCGCGCGCAGGTGGATGAGGTCCGGCAGGTCGAGCGCCAGATCCTGCAC
ATCGTCGTCGACAAGTGCGGCATGCCGCGCTCGGAATTCATCGCGCGTTTCCCGGGCAGCGAGACCGATCTCACGTGGGC
CGAGAAGGTTGCGGCGGAAAGCCATTCGTATAGCGCGATCCTGGTGCGCAACATCCCGGCGATCCACGAACAGCAGCAGC
GCCTGCTCGACCTGCAGGCGCGCGTGGTGTTGCCGCTGAAGGACCTGAAGGAAACCAACCGGCAGATGGCGGCCGGCGAA
CTGAAGGCGCGCCAGGCCAAGCGCGAGATGACCGAGGCCAACCTGCGTCTCGTGATCTCGATCGCTAAGAAGTATACGAA
CCGCGGCCTGCAGTTCCTCGACTTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATATCGTC
GCGGCTACAAGTTCTCGACCTATGCGACGTGGTGGATCCGCCAGGCCATCACGCGCTCGATCGCGGACCAGGCGCGCACC
ATCCGGATCCCGGTTCACATGATCGAGACGATCAACAAGATGAACCGGATCTCGCGTCAGATCCTGCAGGAAACCGGCCT
CGAACCTGATCCGGCGACGCTCGCCGAGAAGATGGAGATGCCCGAGGACAAGATCCGCAAGATCATGAAGATCGCGAAGG
AACCGATCTCGATGGAAACGCCGATCGGCGACGACGACGATTCGCATCTGGGCGACTTCATCGAGGATTCGAACACGGTT
GCGCCGGCCGATGCCGCGCTGCATGCGAGCATGCGCGACGTCGTCAAGGACGTGCTCGATTCGCTGACGCCGCGCGAGGC
AAAGGTGCTGCGGATGCGCTTCGGCATCGAGATGAGCACCGACCATACGCTCGAGGAAGTCGGCAAGCAGTTCGACGTCA
CGCGTGAGCGGATTCGCCAGATCGAGGCCAAGGCACTGCGCAAGCTGCGTCATCCGAGCCGTTCGGACAAGCTGAAATCG
TTCCTCGAAGGGAACTGA

Upstream 100 bases:

>100_bases
GGAAGGAAGTGACTAACGGGGAAGGAAGAGGCTTACCCCAACGTGCTATAATACAAGGTTTTCAGCGGTTTGTTTTCTGA
GCACAGAGGCGAAATTCGCA

Downstream 100 bases:

>100_bases
TCGGCATCCGTGCACAGCGCCGCCGCCGCCGAAGTTGCCGGCGGCGGTTCTTCACTCCCCAATTATTCGGTACAATGCCG
TCCCGGTATCTGCGGCGGGG

Product: RNA polymerase sigma factor RpoD

Products: NA

Alternate protein names: Sigma-70 [H]

Number of amino acids: Translated: 805; Mature: 804

Protein sequence:

>805_residues
MAKTAGGKTAVGKGSDEPTSKVTKARSAGSAKSVSGASPAGRKRTVAGTAKAAPAPTVRASRAVAKSESHAAARPPAERI
SANSARAAAAAADETAVRTTQASTVQQAVVQQPRVELAGTANSMTKKLNEVSVDDDATQSEEQPTAAAAGKEKTTKARDR
RAKEKLLLKEAFASSQPGTAEELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQA
PDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAIS
ACPTTIADILAMAERVANDEIRVDELVDGLLDPNAEDTDGFNAKEAEEAEEAEEEEEEANEDEEEEDDDGAAQATANAAQ
LEALKRASLEKFALISEWFDKMRRAFEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILH
IVVDKCGMPRSEFIARFPGSETDLTWAEKVAAESHSYSAILVRNIPAIHEQQQRLLDLQARVVLPLKDLKETNRQMAAGE
LKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTV
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKS
FLEGN

Sequences:

>Translated_805_residues
MAKTAGGKTAVGKGSDEPTSKVTKARSAGSAKSVSGASPAGRKRTVAGTAKAAPAPTVRASRAVAKSESHAAARPPAERI
SANSARAAAAAADETAVRTTQASTVQQAVVQQPRVELAGTANSMTKKLNEVSVDDDATQSEEQPTAAAAGKEKTTKARDR
RAKEKLLLKEAFASSQPGTAEELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQA
PDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAIS
ACPTTIADILAMAERVANDEIRVDELVDGLLDPNAEDTDGFNAKEAEEAEEAEEEEEEANEDEEEEDDDGAAQATANAAQ
LEALKRASLEKFALISEWFDKMRRAFEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILH
IVVDKCGMPRSEFIARFPGSETDLTWAEKVAAESHSYSAILVRNIPAIHEQQQRLLDLQARVVLPLKDLKETNRQMAAGE
LKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTV
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKS
FLEGN
>Mature_804_residues
AKTAGGKTAVGKGSDEPTSKVTKARSAGSAKSVSGASPAGRKRTVAGTAKAAPAPTVRASRAVAKSESHAAARPPAERIS
ANSARAAAAAADETAVRTTQASTVQQAVVQQPRVELAGTANSMTKKLNEVSVDDDATQSEEQPTAAAAGKEKTTKARDRR
AKEKLLLKEAFASSQPGTAEELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAP
DAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAISA
CPTTIADILAMAERVANDEIRVDELVDGLLDPNAEDTDGFNAKEAEEAEEAEEEEEEANEDEEEEDDDGAAQATANAAQL
EALKRASLEKFALISEWFDKMRRAFEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHI
VVDKCGMPRSEFIARFPGSETDLTWAEKVAAESHSYSAILVRNIPAIHEQQQRLLDLQARVVLPLKDLKETNRQMAAGEL
KARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTVA
PADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSF
LEGN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789448, Length=618, Percent_Identity=55.663430420712, Blast_Score=644, Evalue=0.0,
Organism=Escherichia coli, GI1789098, Length=225, Percent_Identity=41.7777777777778, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI1789871, Length=243, Percent_Identity=26.7489711934156, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR007631
- InterPro:   IPR007127
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04546 Sigma70_ner; PF03979 Sigma70_r1_1; PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 89153; Mature: 89022

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTAGGKTAVGKGSDEPTSKVTKARSAGSAKSVSGASPAGRKRTVAGTAKAAPAPTVRA
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH
SRAVAKSESHAAARPPAERISANSARAAAAAADETAVRTTQASTVQQAVVQQPRVELAGT
HHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ANSMTKKLNEVSVDDDATQSEEQPTAAAAGKEKTTKARDRRAKEKLLLKEAFASSQPGTA
HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
PDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREG
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCC
EIEIAKRIEDGLRHMVMAISACPTTIADILAMAERVANDEIRVDELVDGLLDPNAEDTDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
FNAKEAEEAEEAEEEEEEANEDEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFD
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMRRAFEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILH
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVDKCGMPRSEFIARFPGSETDLTWAEKVAAESHSYSAILVRNIPAIHEQQQRLLDLQA
HHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHH
RVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHH
ILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTV
HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQ
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
IEAKALRKLRHPSRSDKLKSFLEGN
HHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
AKTAGGKTAVGKGSDEPTSKVTKARSAGSAKSVSGASPAGRKRTVAGTAKAAPAPTVRA
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH
SRAVAKSESHAAARPPAERISANSARAAAAAADETAVRTTQASTVQQAVVQQPRVELAGT
HHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ANSMTKKLNEVSVDDDATQSEEQPTAAAAGKEKTTKARDRRAKEKLLLKEAFASSQPGTA
HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQA
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
PDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREG
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCC
EIEIAKRIEDGLRHMVMAISACPTTIADILAMAERVANDEIRVDELVDGLLDPNAEDTDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
FNAKEAEEAEEAEEEEEEANEDEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFD
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMRRAFEKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILH
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVVDKCGMPRSEFIARFPGSETDLTWAEKVAAESHSYSAILVRNIPAIHEQQQRLLDLQA
HHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHH
RVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHH
ILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTV
HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQ
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
IEAKALRKLRHPSRSDKLKSFLEGN
HHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA