| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is trxA [H]
Identifier: 238024921
GI number: 238024921
Start: 1989395
End: 1990633
Strand: Reverse
Name: trxA [H]
Synonym: bglu_2g15660
Alternate gene names: 238024921
Gene position: 1990633-1989395 (Counterclockwise)
Preceding gene: 238024923
Following gene: 238024917
Centisome position: 70.41
GC content: 64.65
Gene sequence:
>1239_bases ATGAGCAGCTTGAAAAGTGTGACCGAAGCGAGCTTCGAGGCCGATGTGACGCTGAACAGCCGTCCGGTGCTGATCGACTT CTGGGCGGAATGGTGCGGGCCGTGCAAGGCGCTGGCGCCGACGCTCGAGAAAGTGGCGCGGAACTTCGAAGGCAAGGTCG ACATCGTCAAGGTCAACGTCGACGAGCATCCTGGCCTGCGCGAGCGCTTTGGCGTGCGCGGCATCCCCGCGCTGGTGCTG ATGAACGGTGCCAACGAGGCGGGCCGCATCGTGGGGAACCGCACCGCCACGCAGCTCGCGAGCTACCTGGATGCGCACCT GGGAACCGTGACGCAACTGGCGCGCCCGGAAGTGACGCTGTCCGCGTTCGGCGGCGATGCGCAGGCGAAAGCGGACCGTA TCGCTCGATTGCGCGACTACCTCGAACGCAAGCAGGCCGATCCGAATACGCCCATGTGGCCGGAAAAGGTCACCGGTGCG CTCGCCTACGTGGCCGGCTCGTCCGATCCGGACGATTGCGCAGTCGCGCTGGGTATCCCGAGCGCCGTGGTCGAGGTCGT GAACTCGTTGTTTACCTATAGGGGAACCAATTTCAATGCTGCGCTGTTCGTGGCCGATTGGCTGGAAAGCGTACCGGTGG GCGCCGACCTTTCCAAGCTGCCGGGTCAGCTGCTGACTTCGATTCTGGCAGGCCCCATCGTCTCGGAAACCCTGAACGGG GAGCCGAGGTTGCTGGCGATTCGCGACGCGCTGGTTTCTCTCCACGCGGCCGAAACGAACGGCTCCCCGGTGGGTGACGC GAGCTGGGCGGAGCACAAGCAGGCTTGTCAGGCGGTGGCAGCCGGGCTCGGAGAGGGTAACGCCGCCAGGGCAGCCGCCG TGCTGGAGGTGGCCGCGTCCTCTGCGGCCAAGAATCCTGACATGTTGAGGGGCTTCGTGGCCGCTGTTTGCGGTTTCGTC CGGAAGTGCCGGCAGGCCGAGTGCAATTGGAGCCCGGAGGACGATTCCCGCTTTTCCAGCATCGCAAAAGGGATTTACAA GCATGCGATCGAGACCGGTGCCGAGCCTCCCATGGGCGATGCGATGCGTAAGCGGATAGCGGAAGTCGATCCGGAACTCG TGGCGCGCTTCAAGTTTCATTACGACGAAGGCTGGCGCAGCGCGCAGGAGCGCGGCACGGCGTTCGGCGACCTGCTGATC GCGCTCACCAGGCAGACTGAAGTGGCTTCGCCAGTTTAG
Upstream 100 bases:
>100_bases GTCCGCGTATCCTGCATGACCCCGCGATGGCGTCGCGACGATGCCGGTGGGTCGGTCGGGCAAGGCCCGACGAGATAGAA CTTGTAAACAGGGAACTGAA
Downstream 100 bases:
>100_bases ACGGTGGGAAAGGCGCCGCGCTGCACCTATCACCGATGAGCGGCGTGCGGCTGGCGCCGGCGGCCGGCGACGCGGCGCTG CAGCCGCGCGCGCGGGCGCC
Product: Thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSSLKSVTEASFEADVTLNSRPVLIDFWAEWCGPCKALAPTLEKVARNFEGKVDIVKVNVDEHPGLRERFGVRGIPALVL MNGANEAGRIVGNRTATQLASYLDAHLGTVTQLARPEVTLSAFGGDAQAKADRIARLRDYLERKQADPNTPMWPEKVTGA LAYVAGSSDPDDCAVALGIPSAVVEVVNSLFTYRGTNFNAALFVADWLESVPVGADLSKLPGQLLTSILAGPIVSETLNG EPRLLAIRDALVSLHAAETNGSPVGDASWAEHKQACQAVAAGLGEGNAARAAAVLEVAASSAAKNPDMLRGFVAAVCGFV RKCRQAECNWSPEDDSRFSSIAKGIYKHAIETGAEPPMGDAMRKRIAEVDPELVARFKFHYDEGWRSAQERGTAFGDLLI ALTRQTEVASPV
Sequences:
>Translated_412_residues MSSLKSVTEASFEADVTLNSRPVLIDFWAEWCGPCKALAPTLEKVARNFEGKVDIVKVNVDEHPGLRERFGVRGIPALVL MNGANEAGRIVGNRTATQLASYLDAHLGTVTQLARPEVTLSAFGGDAQAKADRIARLRDYLERKQADPNTPMWPEKVTGA LAYVAGSSDPDDCAVALGIPSAVVEVVNSLFTYRGTNFNAALFVADWLESVPVGADLSKLPGQLLTSILAGPIVSETLNG EPRLLAIRDALVSLHAAETNGSPVGDASWAEHKQACQAVAAGLGEGNAARAAAVLEVAASSAAKNPDMLRGFVAAVCGFV RKCRQAECNWSPEDDSRFSSIAKGIYKHAIETGAEPPMGDAMRKRIAEVDPELVARFKFHYDEGWRSAQERGTAFGDLLI ALTRQTEVASPV >Mature_411_residues SSLKSVTEASFEADVTLNSRPVLIDFWAEWCGPCKALAPTLEKVARNFEGKVDIVKVNVDEHPGLRERFGVRGIPALVLM NGANEAGRIVGNRTATQLASYLDAHLGTVTQLARPEVTLSAFGGDAQAKADRIARLRDYLERKQADPNTPMWPEKVTGAL AYVAGSSDPDDCAVALGIPSAVVEVVNSLFTYRGTNFNAALFVADWLESVPVGADLSKLPGQLLTSILAGPIVSETLNGE PRLLAIRDALVSLHAAETNGSPVGDASWAEHKQACQAVAAGLGEGNAARAAAVLEVAASSAAKNPDMLRGFVAAVCGFVR KCRQAECNWSPEDDSRFSSIAKGIYKHAIETGAEPPMGDAMRKRIAEVDPELVARFKFHYDEGWRSAQERGTAFGDLLIA LTRQTEVASPV
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=97, Percent_Identity=36.0824742268041, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI21361657, Length=130, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=5e-12, Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=43.1372549019608, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=40.6976744186046, Blast_Score=76, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17556044, Length=116, Percent_Identity=30.1724137931034, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646193, Length=93, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321648, Length=92, Percent_Identity=33.695652173913, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573567, Length=96, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24639826, Length=95, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=4e-15,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 43954; Mature: 43823
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLKSVTEASFEADVTLNSRPVLIDFWAEWCGPCKALAPTLEKVARNFEGKVDIVKVNV CCCHHHHHHHCCCEEEEECCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEC DEHPGLRERFGVRGIPALVLMNGANEAGRIVGNRTATQLASYLDAHLGTVTQLARPEVTL CCCCCHHHHCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEE SAFGGDAQAKADRIARLRDYLERKQADPNTPMWPEKVTGALAYVAGSSDPDDCAVALGIP EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCCCCEEEECCH SAVVEVVNSLFTYRGTNFNAALFVADWLESVPVGADLSKLPGQLLTSILAGPIVSETLNG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCC EPRLLAIRDALVSLHAAETNGSPVGDASWAEHKQACQAVAAGLGEGNAARAAAVLEVAAS CCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SAAKNPDMLRGFVAAVCGFVRKCRQAECNWSPEDDSRFSSIAKGIYKHAIETGAEPPMGD HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH AMRKRIAEVDPELVARFKFHYDEGWRSAQERGTAFGDLLIALTRQTEVASPV HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SSLKSVTEASFEADVTLNSRPVLIDFWAEWCGPCKALAPTLEKVARNFEGKVDIVKVNV CCHHHHHHHCCCEEEEECCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEC DEHPGLRERFGVRGIPALVLMNGANEAGRIVGNRTATQLASYLDAHLGTVTQLARPEVTL CCCCCHHHHCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEE SAFGGDAQAKADRIARLRDYLERKQADPNTPMWPEKVTGALAYVAGSSDPDDCAVALGIP EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCCCCEEEECCH SAVVEVVNSLFTYRGTNFNAALFVADWLESVPVGADLSKLPGQLLTSILAGPIVSETLNG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCC EPRLLAIRDALVSLHAAETNGSPVGDASWAEHKQACQAVAAGLGEGNAARAAAVLEVAAS CCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SAAKNPDMLRGFVAAVCGFVRKCRQAECNWSPEDDSRFSSIAKGIYKHAIETGAEPPMGD HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH AMRKRIAEVDPELVARFKFHYDEGWRSAQERGTAFGDLLIALTRQTEVASPV HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10224002; 10984043 [H]