| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024907
Identifier: 238024907
GI number: 238024907
Start: 1961374
End: 1962618
Strand: Reverse
Name: 238024907
Synonym: bglu_2g15520
Alternate gene names: NA
Gene position: 1962618-1961374 (Counterclockwise)
Preceding gene: 238024908
Following gene: 238024906
Centisome position: 69.42
GC content: 63.61
Gene sequence:
>1245_bases TTGAATCAGCAACGAACGTCGTGGTCACGCACCGCCGCGCCTGGCGAAGTCATCTACTCCGAAGGTTTTGCCGGCGAGCC GGTCATCTACGTGATTACCGAAGGCAAGGTGGAAATATCCACGCAGTGCGACGAGAAAAAAGTCGTGCTGGCCGCGCTGG GCAAGGGCGAGTTCTTCGGCGAGGCGGCGCTGCTGCCCGCGGAGCCGCGAGCGCATACCGCCAAGGCGCTGAGCTTCTGT CAGCTGACCGTGATCCCCGCCGGTCTGCTGGAAGAAGAGCTGGAGCGCGCGTCGCCGCTATTGCGCCACATGCTGCGCAC CATGATCCGCCGTGCGAAAAAGAAGGACGACGTGCTCGCCACCTACACGCATGCCGATTTCCTGCCGGGCATCGTGTCTT ACGCGCATGTTCTCGCGTTGATGGCCAATCACGATTTTGCCGATGCGCTCGACGGGCGGGGGCGGCGCTCGTCGTCCAGC GAAGCGTCCGTGGTGCTGTCGGACGTCATCAAGAAGCTCCACGCCATTGCGGGGCATTCGCGCCCGCATGTGATGGCGAT GCTCAAGCGCATGGAGAAACTGAATCTCGTCGCGCTCGAGCCGGGCCGTTCGGATCGGCTGAGCACGGCGCCCTTGCGCT ACGGCGCACCGGATGGCGTGACGAGCCGCCAGCTGGTCCGGTTCGATCCGGTGAGGATCACGGAACGCGCGCAGCAGGTC GCGAATGCCGAGCTGGACATGTCGATCAGCAGCGAACTCGAGCTGATCGGGCTCACGGACCTGGAGGCGCTGATCGGCGT CGAAAAGCAGGTGATTCTCAACAAGCTCTCTCACGCTGAAATTGCCGAAGACGTGTTCGCGTTTCGCAAGACCAAGGTGT TGAGCTACGTCGAAGAGAAGGGCATCGCCTATTTCTCGCGACGCAGCGTGTCGCGCGCCAGCGATCTGCGGTCACTCGAG GATCTCGAATGGGTCGATCAGCGCACGCTGTTCGAAGCCATCAGCGCGTTCGACACCTACGATCTCGCCAAGCTGCTGGC CTCGATCGAGGGCTCGCCGATTGCCGAGCGCTTGACGGCGGCGATGACCGAGGCGCGCAAGAAGGAAGTGTCGTGGGTGA TGCGGCGCGGCATCAAGCTCGATTCGCTGGAAGTCGCCGAGATCGAGGAGCGGTTCGTCGAGACGGTGCGCGCCATCAAG ACGCCGGCCGGCAACCTCGCGGCGCATCCCGCACCGGGTGCCTGA
Upstream 100 bases:
>100_bases CAATGCCGGTCAGATGCCGTCGAAACGACAAGCTAGTGCAAAATCGGTCATGCGCGCATCAAGACCCGCAGTCCGAAACT TCAACTTTCGGGGCAACAAC
Downstream 100 bases:
>100_bases CAACGGCATCCCATCGCTTGAGAGGGACGTATGGATCTCTTGACACTGTTTGGCGTGGTATTCGGCGTGGCGGCGATTGC CGCCGGATTCACCCTGGAGG
Product: Crp/Fnr family transcriptional regulator
Products: NA
Alternate protein names: Diguanylate Phosphodiesterase
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MNQQRTSWSRTAAPGEVIYSEGFAGEPVIYVITEGKVEISTQCDEKKVVLAALGKGEFFGEAALLPAEPRAHTAKALSFC QLTVIPAGLLEEELERASPLLRHMLRTMIRRAKKKDDVLATYTHADFLPGIVSYAHVLALMANHDFADALDGRGRRSSSS EASVVLSDVIKKLHAIAGHSRPHVMAMLKRMEKLNLVALEPGRSDRLSTAPLRYGAPDGVTSRQLVRFDPVRITERAQQV ANAELDMSISSELELIGLTDLEALIGVEKQVILNKLSHAEIAEDVFAFRKTKVLSYVEEKGIAYFSRRSVSRASDLRSLE DLEWVDQRTLFEAISAFDTYDLAKLLASIEGSPIAERLTAAMTEARKKEVSWVMRRGIKLDSLEVAEIEERFVETVRAIK TPAGNLAAHPAPGA
Sequences:
>Translated_414_residues MNQQRTSWSRTAAPGEVIYSEGFAGEPVIYVITEGKVEISTQCDEKKVVLAALGKGEFFGEAALLPAEPRAHTAKALSFC QLTVIPAGLLEEELERASPLLRHMLRTMIRRAKKKDDVLATYTHADFLPGIVSYAHVLALMANHDFADALDGRGRRSSSS EASVVLSDVIKKLHAIAGHSRPHVMAMLKRMEKLNLVALEPGRSDRLSTAPLRYGAPDGVTSRQLVRFDPVRITERAQQV ANAELDMSISSELELIGLTDLEALIGVEKQVILNKLSHAEIAEDVFAFRKTKVLSYVEEKGIAYFSRRSVSRASDLRSLE DLEWVDQRTLFEAISAFDTYDLAKLLASIEGSPIAERLTAAMTEARKKEVSWVMRRGIKLDSLEVAEIEERFVETVRAIK TPAGNLAAHPAPGA >Mature_414_residues MNQQRTSWSRTAAPGEVIYSEGFAGEPVIYVITEGKVEISTQCDEKKVVLAALGKGEFFGEAALLPAEPRAHTAKALSFC QLTVIPAGLLEEELERASPLLRHMLRTMIRRAKKKDDVLATYTHADFLPGIVSYAHVLALMANHDFADALDGRGRRSSSS EASVVLSDVIKKLHAIAGHSRPHVMAMLKRMEKLNLVALEPGRSDRLSTAPLRYGAPDGVTSRQLVRFDPVRITERAQQV ANAELDMSISSELELIGLTDLEALIGVEKQVILNKLSHAEIAEDVFAFRKTKVLSYVEEKGIAYFSRRSVSRASDLRSLE DLEWVDQRTLFEAISAFDTYDLAKLLASIEGSPIAERLTAAMTEARKKEVSWVMRRGIKLDSLEVAEIEERFVETVRAIK TPAGNLAAHPAPGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45631; Mature: 45631
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQQRTSWSRTAAPGEVIYSEGFAGEPVIYVITEGKVEISTQCDEKKVVLAALGKGEFFG CCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCEEEEECCCCCCEEEEEECCCCCCCC EAALLPAEPRAHTAKALSFCQLTVIPAGLLEEELERASPLLRHMLRTMIRRAKKKDDVLA CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TYTHADFLPGIVSYAHVLALMANHDFADALDGRGRRSSSSEASVVLSDVIKKLHAIAGHS EEHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC RPHVMAMLKRMEKLNLVALEPGRSDRLSTAPLRYGAPDGVTSRQLVRFDPVRITERAQQV CHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEECCHHHHHHHHHH ANAELDMSISSELELIGLTDLEALIGVEKQVILNKLSHAEIAEDVFAFRKTKVLSYVEEK HCCCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAYFSRRSVSRASDLRSLEDLEWVDQRTLFEAISAFDTYDLAKLLASIEGSPIAERLTA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AMTEARKKEVSWVMRRGIKLDSLEVAEIEERFVETVRAIKTPAGNLAAHPAPGA HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MNQQRTSWSRTAAPGEVIYSEGFAGEPVIYVITEGKVEISTQCDEKKVVLAALGKGEFFG CCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCEEEEECCCCCCEEEEEECCCCCCCC EAALLPAEPRAHTAKALSFCQLTVIPAGLLEEELERASPLLRHMLRTMIRRAKKKDDVLA CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE TYTHADFLPGIVSYAHVLALMANHDFADALDGRGRRSSSSEASVVLSDVIKKLHAIAGHS EEHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC RPHVMAMLKRMEKLNLVALEPGRSDRLSTAPLRYGAPDGVTSRQLVRFDPVRITERAQQV CHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEECCHHHHHHHHHH ANAELDMSISSELELIGLTDLEALIGVEKQVILNKLSHAEIAEDVFAFRKTKVLSYVEEK HCCCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAYFSRRSVSRASDLRSLEDLEWVDQRTLFEAISAFDTYDLAKLLASIEGSPIAERLTA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AMTEARKKEVSWVMRRGIKLDSLEVAEIEERFVETVRAIKTPAGNLAAHPAPGA HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA