| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is pdxA [H]
Identifier: 238024877
GI number: 238024877
Start: 1922235
End: 1924583
Strand: Reverse
Name: pdxA [H]
Synonym: bglu_2g15180
Alternate gene names: 238024877
Gene position: 1924583-1922235 (Counterclockwise)
Preceding gene: 238024878
Following gene: 238024876
Centisome position: 68.07
GC content: 71.65
Gene sequence:
>2349_bases ATGAGGACGCCGCGCCTGCTGATGCTCGGCGACGATCTCTCCGGCACCGCCGACTGCGCCGTGACGGGCACGCAGCGCGG GCTGGCGAGCCTGGTCTGCCTCGATGCGGCGCAGGCGCTCGCCGGCGCCGCCGCGGCCGCCGAAGCCGCCAGCGCGGACG TGCTCGCCATCGACACCGACTCGCGCCGAGCCTCGCCGGCCGAGGCGGGCCGCGCGAACGCCGAGGCGTGGCGCGCACAC GCGGCGGGCCGGCGCGTCTACAAGAAGATCGATTCGACGCTGCGCGGCAACGTGGCCGCCGAAGTGGCCGCGCTCGCGGC GCACGCGGGCATGGCGATCGTCGCGCCCGCGCTGCCCGAAGCGGGGCGCACGGTGGTGGACGGCCGGCTGCTCGTGCGCG GCACGCCCGTGGAGGCCACCGAACTATGGCGCAACGAAGGCATCGAAGGCGGCGGCCAGATACCCGCGATGCTGGCCGGC GCCGGGCTGAACGTCGCGCATCTCGATATCGAGGCGGTGCGCGAAGGGGCGGCGGCCTTGCGTGCGCGGCTCGATGCGCA GCGTGCGAGGGGCGTGCATGCCGTGGTCTGCGACAGCGAAACGGATCGCGATCTCGGCATCGTTGCGCAAGCCTCGGCCG AACTCGACGGCGTGTTCTGGGTCGGGTCGGCGGGTCTCGCGCGAACGCTGATCGCCGCGTTGCCCGGCGCCGACGAGGGT GCTCGTGCCGCGCAGCCGCATGCCCCCGCAACGGCCGGCCAGGCGCGCGATGCGCGCGGCGTGCTCGTCGTGGTCGGCAG CATGTCGAGCGTCTCGCACGCGCAGATCGAGGCGCTGCGTAGCGCGGCCGCCGAAGCCTTCGACTGTTTCAGCATCGATG TCGCCGCGCTGCTCGATCCCTCGAGCGCCGCTTCGCTCACGCTCGGCCGGCGCGTGTCGGACGCGTTGACGCGCGGGCGG CACGTGATCGTGGCGATGAATCAGGCCCAACGCGCGCATCCCGCCGTCGCCGCTCAACTCGCCGCCCAGCTCGCGGCGCG CCTCGCGCCCGCCGTCGCGCATGCGGGCGCGCTCGTCGCCACCGGGGGCGAAACGGCGCGCGCGCTGCTCGCGGCCGTGG GCGTGCAGTCGCTGCGCGTGATCGAGGAACTCGAGCCTGGCGTGCCGCTGCTGGCCGCCACCGGGACGGCGCGCGTGCCG GCCGTCGCCACCAAGGCGGGCGGCTTCGGCGCGCCGGACACGCTCTATCGCGTGTGGCGACGGCTCGCCCACGCGCACCC CGACACCACCCGATCCACCGAATCCTGCGCAAACCGCAAAATCAGCAACGAGGAAGCCATGACTTATCGTCCCGTAATCG GCATCACGATGGGCGATGCCGCCGGCGTGGGCCCGGAAATCATCATGAAGAGTCTCGCTCACCAGTCGGTGTACGAAGGC TGCCGCCCGCTCGTGATCGGCGACGCGAAACGTCTCGCCGACGCGGCCAGACGCGCCAATGTCGCGCTCGAAATGCGTTC GATCGCCACGCCCGCCGATGCCCGCTTTCAGTTCGGCGTGGTCGACTGCATCGACCTCGGCCTGATTCCCGAAGCGCTGC CTTACGGCCAGCTCTCGCCGGTGGCCGGCGACGCCGCTTACCAGTACCTCGCGCGCACCGTGGCGCTCACCTCGGCGGGC GAACTCGACGCGATCTGCACCGCGCCGCTCAACAAGGAAGCGCTGCACGCGGGCGGCCACATCTTCCCCGGCCACACCGA AATGCTCGCGCACCTCACCGGCATTCCCGAAGTGTCGATGATGCTGGTGGCGCCCAAGCTGCGTGTGATTCACGTGACCA CCCACATCGGCCTGCTCGATGCCATCCGCAAGATCGAGCCGGGCCTCGTGCAGCGCACGATCGAGCGCGCGCACGACACG CTGGTACGCGCGGGCATCGAAGCGCCTCGCATCGGCGTATGCGGGATCAACCCGCACGCCGGCGAAAACGGCCTGTTCGG CTATGGCGAGGAAGAGGAAAAGATCATGCCGGCCGTGGCCGTGCTGCGCGAGCGCGGCTGGAACGTGGAAGGCCCGCTGC CCGCCGACACGCTGTTCTTCCGCGCCGGACGCGGCGACTTCGACGTGGTGGTGGCGATGTATCACGACCAGGGCCACGGC CCCGTGAAGGTGATGGGCCTGGAAGCGGGCGTCAACGTCACGGTCGGCTTGCCCGTGATCCGCACCTCGGTCGATCACGG CACGGCGTTCGATATCGCGGGCCGGGGCGTCGCCGACGAACGCAGCATGCTCGAAGCGCTCAAGCAGGCAAAGGACCTGG CCACGCGCCGCGCCGTGCACGCCGCCTGA
Upstream 100 bases:
>100_bases CGCTTGCGGTGGCGGCCGCCAAGGTCAAGCGCCTGCTCGCCAACAACCCGAAGCCGCTGAGCCTCGACGACATCAAGTCG ATCTACGCGCGCCTGCTGCC
Downstream 100 bases:
>100_bases AGCCCGCGCGTCCGCATGCGCGCCGCAGACGGCGCGCGCGGGCGGAGCGTCCGCCCGGATTCGCACGCGCTTGTCGAGGT CACAACGATCGGAGACAGAA
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase [H]
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MRTPRLLMLGDDLSGTADCAVTGTQRGLASLVCLDAAQALAGAAAAAEAASADVLAIDTDSRRASPAEAGRANAEAWRAH AAGRRVYKKIDSTLRGNVAAEVAALAAHAGMAIVAPALPEAGRTVVDGRLLVRGTPVEATELWRNEGIEGGGQIPAMLAG AGLNVAHLDIEAVREGAAALRARLDAQRARGVHAVVCDSETDRDLGIVAQASAELDGVFWVGSAGLARTLIAALPGADEG ARAAQPHAPATAGQARDARGVLVVVGSMSSVSHAQIEALRSAAAEAFDCFSIDVAALLDPSSAASLTLGRRVSDALTRGR HVIVAMNQAQRAHPAVAAQLAAQLAARLAPAVAHAGALVATGGETARALLAAVGVQSLRVIEELEPGVPLLAATGTARVP AVATKAGGFGAPDTLYRVWRRLAHAHPDTTRSTESCANRKISNEEAMTYRPVIGITMGDAAGVGPEIIMKSLAHQSVYEG CRPLVIGDAKRLADAARRANVALEMRSIATPADARFQFGVVDCIDLGLIPEALPYGQLSPVAGDAAYQYLARTVALTSAG ELDAICTAPLNKEALHAGGHIFPGHTEMLAHLTGIPEVSMMLVAPKLRVIHVTTHIGLLDAIRKIEPGLVQRTIERAHDT LVRAGIEAPRIGVCGINPHAGENGLFGYGEEEEKIMPAVAVLRERGWNVEGPLPADTLFFRAGRGDFDVVVAMYHDQGHG PVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGRGVADERSMLEALKQAKDLATRRAVHAA
Sequences:
>Translated_782_residues MRTPRLLMLGDDLSGTADCAVTGTQRGLASLVCLDAAQALAGAAAAAEAASADVLAIDTDSRRASPAEAGRANAEAWRAH AAGRRVYKKIDSTLRGNVAAEVAALAAHAGMAIVAPALPEAGRTVVDGRLLVRGTPVEATELWRNEGIEGGGQIPAMLAG AGLNVAHLDIEAVREGAAALRARLDAQRARGVHAVVCDSETDRDLGIVAQASAELDGVFWVGSAGLARTLIAALPGADEG ARAAQPHAPATAGQARDARGVLVVVGSMSSVSHAQIEALRSAAAEAFDCFSIDVAALLDPSSAASLTLGRRVSDALTRGR HVIVAMNQAQRAHPAVAAQLAAQLAARLAPAVAHAGALVATGGETARALLAAVGVQSLRVIEELEPGVPLLAATGTARVP AVATKAGGFGAPDTLYRVWRRLAHAHPDTTRSTESCANRKISNEEAMTYRPVIGITMGDAAGVGPEIIMKSLAHQSVYEG CRPLVIGDAKRLADAARRANVALEMRSIATPADARFQFGVVDCIDLGLIPEALPYGQLSPVAGDAAYQYLARTVALTSAG ELDAICTAPLNKEALHAGGHIFPGHTEMLAHLTGIPEVSMMLVAPKLRVIHVTTHIGLLDAIRKIEPGLVQRTIERAHDT LVRAGIEAPRIGVCGINPHAGENGLFGYGEEEEKIMPAVAVLRERGWNVEGPLPADTLFFRAGRGDFDVVVAMYHDQGHG PVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGRGVADERSMLEALKQAKDLATRRAVHAA >Mature_782_residues MRTPRLLMLGDDLSGTADCAVTGTQRGLASLVCLDAAQALAGAAAAAEAASADVLAIDTDSRRASPAEAGRANAEAWRAH AAGRRVYKKIDSTLRGNVAAEVAALAAHAGMAIVAPALPEAGRTVVDGRLLVRGTPVEATELWRNEGIEGGGQIPAMLAG AGLNVAHLDIEAVREGAAALRARLDAQRARGVHAVVCDSETDRDLGIVAQASAELDGVFWVGSAGLARTLIAALPGADEG ARAAQPHAPATAGQARDARGVLVVVGSMSSVSHAQIEALRSAAAEAFDCFSIDVAALLDPSSAASLTLGRRVSDALTRGR HVIVAMNQAQRAHPAVAAQLAAQLAARLAPAVAHAGALVATGGETARALLAAVGVQSLRVIEELEPGVPLLAATGTARVP AVATKAGGFGAPDTLYRVWRRLAHAHPDTTRSTESCANRKISNEEAMTYRPVIGITMGDAAGVGPEIIMKSLAHQSVYEG CRPLVIGDAKRLADAARRANVALEMRSIATPADARFQFGVVDCIDLGLIPEALPYGQLSPVAGDAAYQYLARTVALTSAG ELDAICTAPLNKEALHAGGHIFPGHTEMLAHLTGIPEVSMMLVAPKLRVIHVTTHIGLLDAIRKIEPGLVQRTIERAHDT LVRAGIEAPRIGVCGINPHAGENGLFGYGEEEEKIMPAVAVLRERGWNVEGPLPADTLFFRAGRGDFDVVVAMYHDQGHG PVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGRGVADERSMLEALKQAKDLATRRAVHAA
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) [H]
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family [H]
Homologues:
Organism=Escherichia coli, GI1786237, Length=321, Percent_Identity=40.1869158878505, Blast_Score=189, Evalue=5e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005255 [H]
Pfam domain/function: PF04166 PdxA [H]
EC number: =1.1.1.262 [H]
Molecular weight: Translated: 80984; Mature: 80984
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTPRLLMLGDDLSGTADCAVTGTQRGLASLVCLDAAQALAGAAAAAEAASADVLAIDTD CCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC SRRASPAEAGRANAEAWRAHAAGRRVYKKIDSTLRGNVAAEVAALAAHAGMAIVAPALPE CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCC AGRTVVDGRLLVRGTPVEATELWRNEGIEGGGQIPAMLAGAGLNVAHLDIEAVREGAAAL CCCEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCHHEECCCCCEEEEEHHHHHHHHHHH RARLDAQRARGVHAVVCDSETDRDLGIVAQASAELDGVFWVGSAGLARTLIAALPGADEG HHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHHCCCCCCC ARAAQPHAPATAGQARDARGVLVVVGSMSSVSHAQIEALRSAAAEAFDCFSIDVAALLDP CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHCCC SSAASLTLGRRVSDALTRGRHVIVAMNQAQRAHPAVAAQLAAQLAARLAPAVAHAGALVA CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE TGGETARALLAAVGVQSLRVIEELEPGVPLLAATGTARVPAVATKAGGFGAPDTLYRVWR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHH RLAHAHPDTTRSTESCANRKISNEEAMTYRPVIGITMGDAAGVGPEIIMKSLAHQSVYEG HHHHCCCCCCCCHHHHHHCCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHC CRPLVIGDAKRLADAARRANVALEMRSIATPADARFQFGVVDCIDLGLIPEALPYGQLSP CCCEEECCHHHHHHHHHHHHHEEEHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCC VAGDAAYQYLARTVALTSAGELDAICTAPLNKEALHAGGHIFPGHTEMLAHLTGIPEVSM CCHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEE MLVAPKLRVIHVTTHIGLLDAIRKIEPGLVQRTIERAHDTLVRAGIEAPRIGVCGINPHA EEECCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC GENGLFGYGEEEEKIMPAVAVLRERGWNVEGPLPADTLFFRAGRGDFDVVVAMYHDQGHG CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCC PVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGRGVADERSMLEALKQAKDLATRRAVH CEEEEEEECCCEEEECCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC AA CC >Mature Secondary Structure MRTPRLLMLGDDLSGTADCAVTGTQRGLASLVCLDAAQALAGAAAAAEAASADVLAIDTD CCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC SRRASPAEAGRANAEAWRAHAAGRRVYKKIDSTLRGNVAAEVAALAAHAGMAIVAPALPE CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCC AGRTVVDGRLLVRGTPVEATELWRNEGIEGGGQIPAMLAGAGLNVAHLDIEAVREGAAAL CCCEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCHHEECCCCCEEEEEHHHHHHHHHHH RARLDAQRARGVHAVVCDSETDRDLGIVAQASAELDGVFWVGSAGLARTLIAALPGADEG HHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHHCCCCCCC ARAAQPHAPATAGQARDARGVLVVVGSMSSVSHAQIEALRSAAAEAFDCFSIDVAALLDP CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHCCC SSAASLTLGRRVSDALTRGRHVIVAMNQAQRAHPAVAAQLAAQLAARLAPAVAHAGALVA CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE TGGETARALLAAVGVQSLRVIEELEPGVPLLAATGTARVPAVATKAGGFGAPDTLYRVWR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHH RLAHAHPDTTRSTESCANRKISNEEAMTYRPVIGITMGDAAGVGPEIIMKSLAHQSVYEG HHHHCCCCCCCCHHHHHHCCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHC CRPLVIGDAKRLADAARRANVALEMRSIATPADARFQFGVVDCIDLGLIPEALPYGQLSP CCCEEECCHHHHHHHHHHHHHEEEHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCC VAGDAAYQYLARTVALTSAGELDAICTAPLNKEALHAGGHIFPGHTEMLAHLTGIPEVSM CCHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEE MLVAPKLRVIHVTTHIGLLDAIRKIEPGLVQRTIERAHDTLVRAGIEAPRIGVCGINPHA EEECCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC GENGLFGYGEEEEKIMPAVAVLRERGWNVEGPLPADTLFFRAGRGDFDVVVAMYHDQGHG CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCC PVKVMGLEAGVNVTVGLPVIRTSVDHGTAFDIAGRGVADERSMLEALKQAKDLATRRAVH CEEEEEEECCCEEEECCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC AA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]