Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is resE [H]
Identifier: 229917934
GI number: 229917934
Start: 2147769
End: 2149610
Strand: Reverse
Name: resE [H]
Synonym: EAT1b_2213
Alternate gene names: 229917934
Gene position: 2149610-2147769 (Counterclockwise)
Preceding gene: 229917941
Following gene: 229917933
Centisome position: 71.66
GC content: 45.93
Gene sequence:
>1842_bases ATGATCAGCAAGTGGATTGAACAATTGAACAGTCGTCAAATACTCAGTATTTTATATAGTGTCTGTGGATTCAGTCTGGT TTTAACCTTGATTGGGGCCTGGTTCGTTCGAGATGGGAATGTCTCCACTCTCGAACTCACTGCCCTCCGATGGATTTGGA TGATTGGATTGGTCATGTTCATCAGTGCCATTTTATTGATCGGACGCCCGCTCATCAAACGGATGGCCGACCAGAACAGC AGACTGAAAGCGAAGAAAGAAAAGCTCGAAACCGTGTTGAACGAATCAAAATTAAATGAAATCAATCTTCAATATCGCAA TGAGTTGATTGAAGTATTGGCCTCGAAAGAATCCTTATTCGATTACTCTTCTGTCATTGAAAAGATTGTGTTGCTTACAA AATCTGAGTTCGGTGCCCTTTTACTCACAAAAGACGGAGAAATCACGTCTGTCGTACCGAAAGAGATGACCGAAGATCAG CAGGAAAGTCTAAAGAAAGACTCCCTTTTGCTTAAACGAGTCATGATTTCAAAGTTACCGGCCGCCACTTCTAAGCGGGT CGTCGATGCGTTACACACGTATCCATATTATATCTATGAGACGGTCATTCCCATCATGGACCCATCGGATAATAGTCTGA TTGGCTGTCTTTACTTGGCGCGTTACGACGAACAGTACGACGCCAGTGAAAAATCGGAGTTGAACGCGTTTGCTGGTCAA CTTGCCATCTCTCTTCTTCGCATGCAGCTTTATCGTCAGATGCAGCAGGATCGAAAAGAAACAGCGCAACTCATTAACTC TGTACGGGAAGCTATTCTGTATGTGAACTATGAGGACGATACCGTCGTCGGGAATCGCGCCTTCATTCGCATGTTTGATG ATTTACACTTTGACTACAAGGGATACGAAGAACTCTCTGCCATCGATATCGATATCGAGCAATTAGCAGAACGCGTCGAT CAGCATGAACAGTTTGTCCGATACTTCGAACGCGTCTTCACGCAAGACCCGCCAGAGGATGGGCTCACGATTTCAATCGA CCAAGGCGATTGCTTCATTCAACTTTATGCCGAAAGCGTCTATCGGGACCGCAAACTCCGTGGAACGATGCTCGTCTTAC GTGACGTCACGGCCGAAACGGAGATTGATCGGATGAAATCCGAACTCGTCTCGACCGTCTCACATGAATTACGGACACCA TTGTCCTCGATTTACGGATTTACTGAACTGATGCTGTCACGTGATTTGAAGGAAAGTCGTCGTGAACTGTATTTGAAGAC GATTCACGATGAAGCGAAACGCCTTTCCTATCTCGTCAACGATTTCTTAGATCTTCAAAAGATGGAGTCTGGAAAGCAAG CGTTCGAGTGGGAACCGGTCGACTTATATCAGCTCGTCACAGACAGTGTCGCATTTTATCAGGAAACGACGGACCGACAT GAGCTGTTCATCGACGCCGATACCGAACAAGATTTCATTATTGATGCGGACTTAGAAGGAATGCGTCAATTACTCGGCAA CCTATTAAGTAACGCAATCAAATATTCGCCAGATGGCGGGAATATCCTTGTATCGCTCGAACGCGTAGATGAAGAGGTCG TGATGAAAGTGAGAGACCATGGTATGGGAATACCGAGTGCCTCGCTCCCTCACCTCTTCGGGAAATTCTACCGGGTCGAT AATTCGGACCGTCGAAAAATCGGAGGTACCGGTCTCGGTCTCGCAATTTGTAAAGAAATTGCCAAAGCCCATGAGGGTCA ACTCCATGTCGAATCGGTATATGGAGAGGGCAGTACATTCATCTGTGAACTGCCAACCTCAAAAGAGCACATCATGCAAT AA
Upstream 100 bases:
>100_bases ATAAGCAAATTGTTTCATTTCCCTTTCCCGGTCTCATAGAATTCAGGGCAAGGAAGAGATGACACCTCGTTTTTTATGTT CAAGGAAGGAAGTAGAACGA
Downstream 100 bases:
>100_bases CACGGTCATGTCGACCGTGTTATTTTTGACTCTTTTTTGCCTAATTTGGAAGGAATCCTTTTACAATATATAGAAAGGAA AGAAACCGATTCATTTTCGT
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MISKWIEQLNSRQILSILYSVCGFSLVLTLIGAWFVRDGNVSTLELTALRWIWMIGLVMFISAILLIGRPLIKRMADQNS RLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLFDYSSVIEKIVLLTKSEFGALLLTKDGEITSVVPKEMTEDQ QESLKKDSLLLKRVMISKLPAATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQ LAISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYKGYEELSAIDIDIEQLAERVD QHEQFVRYFERVFTQDPPEDGLTISIDQGDCFIQLYAESVYRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTP LSSIYGFTELMLSRDLKESRRELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRH ELFIDADTEQDFIIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHLFGKFYRVD NSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSKEHIMQ
Sequences:
>Translated_613_residues MISKWIEQLNSRQILSILYSVCGFSLVLTLIGAWFVRDGNVSTLELTALRWIWMIGLVMFISAILLIGRPLIKRMADQNS RLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLFDYSSVIEKIVLLTKSEFGALLLTKDGEITSVVPKEMTEDQ QESLKKDSLLLKRVMISKLPAATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQ LAISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYKGYEELSAIDIDIEQLAERVD QHEQFVRYFERVFTQDPPEDGLTISIDQGDCFIQLYAESVYRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTP LSSIYGFTELMLSRDLKESRRELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRH ELFIDADTEQDFIIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHLFGKFYRVD NSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSKEHIMQ >Mature_613_residues MISKWIEQLNSRQILSILYSVCGFSLVLTLIGAWFVRDGNVSTLELTALRWIWMIGLVMFISAILLIGRPLIKRMADQNS RLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLFDYSSVIEKIVLLTKSEFGALLLTKDGEITSVVPKEMTEDQ QESLKKDSLLLKRVMISKLPAATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQ LAISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYKGYEELSAIDIDIEQLAERVD QHEQFVRYFERVFTQDPPEDGLTISIDQGDCFIQLYAESVYRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTP LSSIYGFTELMLSRDLKESRRELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRH ELFIDADTEQDFIIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHLFGKFYRVD NSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSKEHIMQ
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786600, Length=236, Percent_Identity=32.2033898305085, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI48994928, Length=269, Percent_Identity=35.6877323420074, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1789149, Length=226, Percent_Identity=34.5132743362832, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1788713, Length=226, Percent_Identity=31.858407079646, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI145693157, Length=230, Percent_Identity=32.6086956521739, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1786783, Length=225, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788393, Length=227, Percent_Identity=30.8370044052863, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI87081816, Length=258, Percent_Identity=31.3953488372093, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788549, Length=253, Percent_Identity=26.8774703557312, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1790436, Length=224, Percent_Identity=31.25, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI1790346, Length=235, Percent_Identity=31.063829787234, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1790551, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1790861, Length=272, Percent_Identity=26.8382352941176, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1786912, Length=240, Percent_Identity=28.75, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI87082128, Length=230, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788279, Length=205, Percent_Identity=28.2926829268293, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787894, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1789808, Length=222, Percent_Identity=28.8288288288288, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 70388; Mature: 70388
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISKWIEQLNSRQILSILYSVCGFSLVLTLIGAWFVRDGNVSTLELTALRWIWMIGLVMF CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHH ISAILLIGRPLIKRMADQNSRLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLF HHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH DYSSVIEKIVLLTKSEFGALLLTKDGEITSVVPKEMTEDQQESLKKDSLLLKRVMISKLP HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHCC AATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQ CHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHH LAISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEECCHHHHHHHHHHCCCCC GYEELSAIDIDIEQLAERVDQHEQFVRYFERVFTQDPPEDGLTISIDQGDCFIQLYAESV CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHH YRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLKESR HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC ELFIDADTEQDFIIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDH EEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHCHHHHHHHHHC GMGIPSASLPHLFGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTF CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEE ICELPTSKEHIMQ EEECCCCHHHHCC >Mature Secondary Structure MISKWIEQLNSRQILSILYSVCGFSLVLTLIGAWFVRDGNVSTLELTALRWIWMIGLVMF CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHH ISAILLIGRPLIKRMADQNSRLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLF HHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH DYSSVIEKIVLLTKSEFGALLLTKDGEITSVVPKEMTEDQQESLKKDSLLLKRVMISKLP HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHCC AATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQ CHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHH LAISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEECCHHHHHHHHHHCCCCC GYEELSAIDIDIEQLAERVDQHEQFVRYFERVFTQDPPEDGLTISIDQGDCFIQLYAESV CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHH YRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLKESR HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC ELFIDADTEQDFIIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDH EEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHCHHHHHHHHHC GMGIPSASLPHLFGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTF CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEE ICELPTSKEHIMQ EEECCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]