Click here to switch to the map view.

The map label for this gene is yedQ [H]

Identifier: 229917756

GI number: 229917756

Start: 1986558

End: 1988237

Strand: Reverse

Name: yedQ [H]

Synonym: EAT1b_2034

Alternate gene names: 229917756

Gene position: 1988237-1986558 (Counterclockwise)

Preceding gene: 229917758

Following gene: 229917755

Centisome position: 66.28

GC content: 45.83

Gene sequence:

>1680_bases
ATGAACCACTTTCGCAAGATGTCCGTGCTCGGTTGGAGTATATGGAGTGTTTTGTTCTGCTTCACCATCGGATTATTTGC
ATTGGATGTGCTGCACGCCCCGACCATCGATCCGTTGTCTTTTATTTTAATCTCATTACTTGTCATCATCTTTCAACTCG
ATTCAATCGAAGTCAAAGGTGTGTACTTCACATTCTCTGAGAGTATCGTATTAATTCTATTTCTATTTTTTGGATTTGAA
ACAGCACTCATCGTCAACCAGATTGGATTATTCGTCTTTCAGTTCGCCAATCTGAGACCAAAAGTCGCCATACGCCGCTT
CCGCTTCACCTATCCGTGGAACGCCATTACGGCGTACTTGGAAATTGTCATTCCCGCTACCGTCTATCTCGCCCTCGGCG
GGGTAACCGGCCTTGATTTTTATTCGCAAGAATCGTTTGTACCGCTCGCCGGGTTATTCCTTGCCATCTTCTTAAATACC
GTATTTCAAAAATATCAGGTGAGATGGTGGTTCCGCGTCGATATCGCATTGAGCGACTTCATGAAAATCGCTTTCTACAC
ATACGTCGTCAGTTTGATCTTCATCTTAGCGGCAGCGTTCTTCCGAGAGACGAATTTACTTGTCGTCAGTAGCATCGCGG
CAGCGTTGACCTTCTTCATCAAACGACTTCTCATTCAAAAAGAGCGACAGGATGCGTATAAATCTTTGATTGAACAGTAC
GATGAAGCGAAAGAAGCCGTCTCTTTATCACAGAGCGAAGCGCAAGCAATTGAAGTCTTTTTAAGTCAGTGTGAACAATT
GAACCATTACGATGAAGGATATATCGAGTTCAAGCTATTCAATCGCACACTCTATTTTGACTTGAAGACACGTCAACCGA
TTGATCGCCCCATCGTATTTGCGCTACTGGATATCAGTCAACCTGTCGAGCCGGTCCTTGACTACGAGATGCGATTTGAG
TGGGATGCCTCATTGTCTGACGCTTTTCATGACGATTACCATAGCTTCGTCTCAATTCGTTCGGAAGAGATTGAGGGAAT
TCGCACATGGATCGTGATGACAGGAGAACCCGTATATGGGTATCCGAAGATTATCCAACAGGAAATCATCAAGTTGCTTA
AGTCGTTCAACCGGACCATCAGCCGCTGTCATGAACGAGATCGTCTGTATACTGAGAGCCGGACGGACAGTTTGACCCTT
CTCGCCAATGCTCGCGCTTTCTACGAATACGGGATTCAACAAATATCCGACATCTCGATGTATCCGATCTCGGTCGCCAT
GCTCGACATCGATTTCTTTAAAAAAATCAATGATACGTATGGCCATCAAGTCGGTGACCAAGTGTTACAGGAATTTGGTC
GACGTATCCGGCAAGTCCTTCGTGCTGATGACTTCGCCGCCCGTTATGGTGGGGAAGAATTTATCTTGCTTCTCAATCAT
TGTGACATGTCTCAAGCCGTTGACATTGCAGAAAGAATTCGCCAGCAAATCGAAGCGAAACCGTTCCTTGTCGATCATCA
TGAGATTTCTGTGACCGCGTCCATCGGGGTCGATACAATCGATGCGTTTGGAAATAAGCGCTTAGACGATACGATTCGAA
ACGCGGACCGTGCCCTATATGTCGGCGGGAAATATGCGGGACGTAACCGCGTGGCGCACTTCAACAATTTAACGACATAA

Upstream 100 bases:

>100_bases
GCTAGAATTCAAGCATGATAAAAGAAAGGCAGGACTCGTACGAAATCATGACGAATCTTTACTATTATATCTTGAAATGT
CCCATGCTAGGAGGGAACAC

Downstream 100 bases:

>100_bases
ACTCCCCTTTCTCACATCGAATTGGGGAGTTTTTAAGTTGACAAGCGGATTTGAAACAGGTACGTTAGGGAACGTGTTTA
CTAATTGGATAGATTCACTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MNHFRKMSVLGWSIWSVLFCFTIGLFALDVLHAPTIDPLSFILISLLVIIFQLDSIEVKGVYFTFSESIVLILFLFFGFE
TALIVNQIGLFVFQFANLRPKVAIRRFRFTYPWNAITAYLEIVIPATVYLALGGVTGLDFYSQESFVPLAGLFLAIFLNT
VFQKYQVRWWFRVDIALSDFMKIAFYTYVVSLIFILAAAFFRETNLLVVSSIAAALTFFIKRLLIQKERQDAYKSLIEQY
DEAKEAVSLSQSEAQAIEVFLSQCEQLNHYDEGYIEFKLFNRTLYFDLKTRQPIDRPIVFALLDISQPVEPVLDYEMRFE
WDASLSDAFHDDYHSFVSIRSEEIEGIRTWIVMTGEPVYGYPKIIQQEIIKLLKSFNRTISRCHERDRLYTESRTDSLTL
LANARAFYEYGIQQISDISMYPISVAMLDIDFFKKINDTYGHQVGDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNH
CDMSQAVDIAERIRQQIEAKPFLVDHHEISVTASIGVDTIDAFGNKRLDDTIRNADRALYVGGKYAGRNRVAHFNNLTT

Sequences:

>Translated_559_residues
MNHFRKMSVLGWSIWSVLFCFTIGLFALDVLHAPTIDPLSFILISLLVIIFQLDSIEVKGVYFTFSESIVLILFLFFGFE
TALIVNQIGLFVFQFANLRPKVAIRRFRFTYPWNAITAYLEIVIPATVYLALGGVTGLDFYSQESFVPLAGLFLAIFLNT
VFQKYQVRWWFRVDIALSDFMKIAFYTYVVSLIFILAAAFFRETNLLVVSSIAAALTFFIKRLLIQKERQDAYKSLIEQY
DEAKEAVSLSQSEAQAIEVFLSQCEQLNHYDEGYIEFKLFNRTLYFDLKTRQPIDRPIVFALLDISQPVEPVLDYEMRFE
WDASLSDAFHDDYHSFVSIRSEEIEGIRTWIVMTGEPVYGYPKIIQQEIIKLLKSFNRTISRCHERDRLYTESRTDSLTL
LANARAFYEYGIQQISDISMYPISVAMLDIDFFKKINDTYGHQVGDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNH
CDMSQAVDIAERIRQQIEAKPFLVDHHEISVTASIGVDTIDAFGNKRLDDTIRNADRALYVGGKYAGRNRVAHFNNLTT
>Mature_559_residues
MNHFRKMSVLGWSIWSVLFCFTIGLFALDVLHAPTIDPLSFILISLLVIIFQLDSIEVKGVYFTFSESIVLILFLFFGFE
TALIVNQIGLFVFQFANLRPKVAIRRFRFTYPWNAITAYLEIVIPATVYLALGGVTGLDFYSQESFVPLAGLFLAIFLNT
VFQKYQVRWWFRVDIALSDFMKIAFYTYVVSLIFILAAAFFRETNLLVVSSIAAALTFFIKRLLIQKERQDAYKSLIEQY
DEAKEAVSLSQSEAQAIEVFLSQCEQLNHYDEGYIEFKLFNRTLYFDLKTRQPIDRPIVFALLDISQPVEPVLDYEMRFE
WDASLSDAFHDDYHSFVSIRSEEIEGIRTWIVMTGEPVYGYPKIIQQEIIKLLKSFNRTISRCHERDRLYTESRTDSLTL
LANARAFYEYGIQQISDISMYPISVAMLDIDFFKKINDTYGHQVGDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNH
CDMSQAVDIAERIRQQIEAKPFLVDHHEISVTASIGVDTIDAFGNKRLDDTIRNADRALYVGGKYAGRNRVAHFNNLTT

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=39.622641509434, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=157, Percent_Identity=38.2165605095541, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=34.2245989304813, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=133, Percent_Identity=38.3458646616541, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=36, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=35.5828220858896, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=35.7954545454545, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=33.9181286549708, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=32.0754716981132, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=29.4478527607362, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64613; Mature: 64613

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFRKMSVLGWSIWSVLFCFTIGLFALDVLHAPTIDPLSFILISLLVIIFQLDSIEVKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
VYFTFSESIVLILFLFFGFETALIVNQIGLFVFQFANLRPKVAIRRFRFTYPWNAITAYL
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCHHHHHHHH
EIVIPATVYLALGGVTGLDFYSQESFVPLAGLFLAIFLNTVFQKYQVRWWFRVDIALSDF
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHH
MKIAFYTYVVSLIFILAAAFFRETNLLVVSSIAAALTFFIKRLLIQKERQDAYKSLIEQY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEAKEAVSLSQSEAQAIEVFLSQCEQLNHYDEGYIEFKLFNRTLYFDLKTRQPIDRPIVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHH
ALLDISQPVEPVLDYEMRFEWDASLSDAFHDDYHSFVSIRSEEIEGIRTWIVMTGEPVYG
HHHHCCCCCHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCC
YPKIIQQEIIKLLKSFNRTISRCHERDRLYTESRTDSLTLLANARAFYEYGIQQISDISM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
YPISVAMLDIDFFKKINDTYGHQVGDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNH
CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEEEC
CDMSQAVDIAERIRQQIEAKPFLVDHHEISVTASIGVDTIDAFGNKRLDDTIRNADRALY
CCHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCEEE
VGGKYAGRNRVAHFNNLTT
ECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNHFRKMSVLGWSIWSVLFCFTIGLFALDVLHAPTIDPLSFILISLLVIIFQLDSIEVKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
VYFTFSESIVLILFLFFGFETALIVNQIGLFVFQFANLRPKVAIRRFRFTYPWNAITAYL
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCHHHHHHHH
EIVIPATVYLALGGVTGLDFYSQESFVPLAGLFLAIFLNTVFQKYQVRWWFRVDIALSDF
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHH
MKIAFYTYVVSLIFILAAAFFRETNLLVVSSIAAALTFFIKRLLIQKERQDAYKSLIEQY
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEAKEAVSLSQSEAQAIEVFLSQCEQLNHYDEGYIEFKLFNRTLYFDLKTRQPIDRPIVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCHHH
ALLDISQPVEPVLDYEMRFEWDASLSDAFHDDYHSFVSIRSEEIEGIRTWIVMTGEPVYG
HHHHCCCCCHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCC
YPKIIQQEIIKLLKSFNRTISRCHERDRLYTESRTDSLTLLANARAFYEYGIQQISDISM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
YPISVAMLDIDFFKKINDTYGHQVGDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNH
CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEEEC
CDMSQAVDIAERIRQQIEAKPFLVDHHEISVTASIGVDTIDAFGNKRLDDTIRNADRALY
CCHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCHHHHHCCCCCHHHHHHCCCCEEE
VGGKYAGRNRVAHFNNLTT
ECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]