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The map label for this gene is ydgJ [H]

Identifier: 229917618

GI number: 229917618

Start: 1858380

End: 1858826

Strand: Reverse

Name: ydgJ [H]

Synonym: EAT1b_1893

Alternate gene names: 229917618

Gene position: 1858826-1858380 (Counterclockwise)

Preceding gene: 229917625

Following gene: 229917617

Centisome position: 61.96

GC content: 44.97

Gene sequence:

>447_bases
ATGCGAGATTCTTGCTCGCTTCGTGATCAAATTCTCTATCACATCATCACTGTACAAAAAGAATTAGGGCAATTATTCGA
CTCTGAAATGGACGGGCTCAGCTTGAGTCGCTACGACATTTTGAGCAACTTGTATCACGTCGGTCCATTGCGGCAACGTG
AATTGCAACAGCGCGTCGATGTCGACCATGCCGCCATCACCCGACACCTGAAACAATTAGAGACACAAGGACTCATCACG
CGGAGACGCTGTGAACAAGATAACCGTGTCATCTATGTTGAGTTGACAGACGAGGGTCGTGAACAAATTGCACATTGGAC
TGAGCAAAAAGAGTGCTTAACGGACCGACTTTTTGTCAACATGAAGGTAGAGGATCAACAACAGTTACTAGCATCACTCA
CGATGTTACAAGATACTATTGACCATGAAAGGAAGACTACAATATGA

Upstream 100 bases:

>100_bases
TTTTAAAACTTTTTATTTGAAATATCGTCAGGATGGGTTTACTATACATTGTGTGACCCATCAATGATTGAGTCATCAAT
GATTTGAGGAGGCGATGTGC

Downstream 100 bases:

>100_bases
ACACTGCCACACAAAAAGACTTTATGGAGATTGTCAAAGGACGCCGCTCGATTCGTGTATACGATGAGAACGTCAAAATC
TCAAAAGAAGAAATGACACA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRDSCSLRDQILYHIITVQKELGQLFDSEMDGLSLSRYDILSNLYHVGPLRQRELQQRVDVDHAAITRHLKQLETQGLIT
RRRCEQDNRVIYVELTDEGREQIAHWTEQKECLTDRLFVNMKVEDQQQLLASLTMLQDTIDHERKTTI

Sequences:

>Translated_148_residues
MRDSCSLRDQILYHIITVQKELGQLFDSEMDGLSLSRYDILSNLYHVGPLRQRELQQRVDVDHAAITRHLKQLETQGLIT
RRRCEQDNRVIYVELTDEGREQIAHWTEQKECLTDRLFVNMKVEDQQQLLASLTMLQDTIDHERKTTI
>Mature_148_residues
MRDSCSLRDQILYHIITVQKELGQLFDSEMDGLSLSRYDILSNLYHVGPLRQRELQQRVDVDHAAITRHLKQLETQGLIT
RRRCEQDNRVIYVELTDEGREQIAHWTEQKECLTDRLFVNMKVEDQQQLLASLTMLQDTIDHERKTTI

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17522; Mature: 17522

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDSCSLRDQILYHIITVQKELGQLFDSEMDGLSLSRYDILSNLYHVGPLRQRELQQRVD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VDHAAITRHLKQLETQGLITRRRCEQDNRVIYVELTDEGREQIAHWTEQKECLTDRLFVN
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEE
MKVEDQQQLLASLTMLQDTIDHERKTTI
CCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDSCSLRDQILYHIITVQKELGQLFDSEMDGLSLSRYDILSNLYHVGPLRQRELQQRVD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VDHAAITRHLKQLETQGLITRRRCEQDNRVIYVELTDEGREQIAHWTEQKECLTDRLFVN
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEE
MKVEDQQQLLASLTMLQDTIDHERKTTI
CCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]