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The map label for this gene is yhdH [H]

Identifier: 227815723

GI number: 227815723

Start: 2867706

End: 2869064

Strand: Reverse

Name: yhdH [H]

Synonym: BAMEG_3144

Alternate gene names: 227815723

Gene position: 2869064-2867706 (Counterclockwise)

Preceding gene: 227815724

Following gene: 227815721

Centisome position: 54.86

GC content: 35.47

Gene sequence:

>1359_bases
ATGATGAAAGAAACACAGCAATGGACGTCGAAAATAGGATTTGTACTCGCAGCAGCCGGAGCCGCAGTAGGTCTTGGTGC
GATATGGAAATTTCCATATGTTGCAGGTAATGGCGGGGGAGGCGCATTCTTCCTTGTATTTTTACTATTAACTTTATTTA
TAGGTATGCCGCTTCTATTAGCTGAATTTGTTATTGGACGTAGTACGCAAAAAGAGGCAGTTACAGCGTATAAAGTATTG
GTGCCAAATAGCAAGTTATATCCTTGGATTGGTCGTATGGGAGTTGTTACTTGTTTTAGTGTACTATCTTTTTATAGTGT
TGTAGGTGGATGGATTTTACTGTATTTATACTATAGTATTACAGGAAGCTTCTGGAATGGTGTTGTTGATTACGGAAAAT
TGTTTAATGAAACGATTTCAAATCCGCTAAGTGCGATTGGAGCACAATTTATCTTTATGCTTTGTACGATTTTTGTTGTA
AGTAAAGGTGTAGAGAAAGGGATAGAAAAAGCAAGTAAGTATATGATGCCGCTATTATTTATTTTATTTATTGCGATCAT
TGTTCGTGCATTAACACTTGATGGTGCTTTTGCAGGAGTAGAGTTCTTTTTAAAACCTGATTTTTCAAAACTAACAGCAG
ATACGGTTTTATACGCGATGGGACAATCTTTCTTCTCGCTCACAGTAGGTGCCTCAGTAATGGTAACGTATAGTTCGTAT
TTGAAGAAAGAAGAACATTTAGCGAAATCAGCAACATCTATTGTAAGTTTAACTGTTTTTATTACAGTACTTGCAGGATT
AGCAATTTTCCCGGCGATTTTCGCATTAGGCGTTAAGCCGACTGAAGGACCAGGACTACTGTTTATCGTCCTTCCAGCAG
TATTTGCGAAAATACCATTTGGACAATTTTTCTTCATTATGTTTTTAGTTTTATTCTTCTTTGCAACATTAACATCTGCG
ATTTCCATGCTTGAAATTGTAGTAGCATCTGTTGCGAAAGATAATGAGAAAAAACGTCCGTCAGCATCATTATTAATCGG
TATTCTTATTTTTGCAGTCGGAATTCCGTCAGCATTATCGTTTGGCATTATGAGTGATGTGAAAATATTTGGGAAGACAT
TCTTTGATTTCGTCGATTTTGTGGTAAGTAATGTATTATTGCCACTCGGAGTACTAGCCATTTCGCTATTCGTACCAAAT
AAAATGAGTAAAGAAATGTTAATGAAAGAATTAGAAGTTACGGAAACGAAAGGAAAAACATTATTTAATATTTGGTTCTT
CTTGCTTCGTTATGTTATTCCAGTAACTGTAATTATTGTATTTTTAAATGCGATAGGCGTATTTAAAATGTTTGCATAA

Upstream 100 bases:

>100_bases
TTGCGTGTAGGGGACTTTTTTATTTTCTAAAGGAGGTGTGCGAGTATGAAATGAAAGTGTATAATTAATAAAAGTTTAAA
TATTCAGAAAAGGGGAATTT

Downstream 100 bases:

>100_bases
TAAAAAGACGGAGAAAGCTCCGTCTTTTTATTATGTGGTAGGTGTATTTAATGAGTGATTATATGCTTTATAAGCTGTGA
TGATTGCAAGGAATAATCTG

Product: putative sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSITGSFWNGVVDYGKLFNETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTVLYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLVLFFFATLTSA
ISMLEIVVASVAKDNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDFVDFVVSNVLLPLGVLAISLFVPN
KMSKEMLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA

Sequences:

>Translated_452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSITGSFWNGVVDYGKLFNETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTVLYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLVLFFFATLTSA
ISMLEIVVASVAKDNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDFVDFVVSNVLLPLGVLAISLFVPN
KMSKEMLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA
>Mature_452_residues
MMKETQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRMGVVTCFSVLSFYSVVGGWILLYLYYSITGSFWNGVVDYGKLFNETISNPLSAIGAQFIFMLCTIFVV
SKGVEKGIEKASKYMMPLLFILFIAIIVRALTLDGAFAGVEFFLKPDFSKLTADTVLYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIVLPAVFAKIPFGQFFFIMFLVLFFFATLTSA
ISMLEIVVASVAKDNEKKRPSASLLIGILIFAVGIPSALSFGIMSDVKIFGKTFFDFVDFVVSNVLLPLGVLAISLFVPN
KMSKEMLMKELEVTETKGKTLFNIWFFLLRYVIPVTVIIVFLNAIGVFKMFA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI171184408, Length=403, Percent_Identity=27.0471464019851, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI171184406, Length=403, Percent_Identity=27.0471464019851, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI171184404, Length=403, Percent_Identity=27.0471464019851, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI4507043, Length=379, Percent_Identity=28.4960422163588, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI21361581, Length=406, Percent_Identity=26.3546798029557, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI289191351, Length=388, Percent_Identity=27.0618556701031, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI4557046, Length=388, Percent_Identity=27.0618556701031, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI289191377, Length=388, Percent_Identity=27.0618556701031, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI7657587, Length=380, Percent_Identity=26.0526315789474, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI4507041, Length=389, Percent_Identity=25.9640102827763, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI92859670, Length=451, Percent_Identity=24.390243902439, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI134304856, Length=401, Percent_Identity=26.9326683291771, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI188528618, Length=379, Percent_Identity=23.2189973614776, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI51468073, Length=296, Percent_Identity=28.7162162162162, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI197276623, Length=351, Percent_Identity=25.6410256410256, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI54607094, Length=351, Percent_Identity=25.6410256410256, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI33354281, Length=298, Percent_Identity=27.8523489932886, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI58219014, Length=300, Percent_Identity=28, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI67782317, Length=424, Percent_Identity=24.2924528301887, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI67782313, Length=424, Percent_Identity=24.2924528301887, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI67782315, Length=424, Percent_Identity=24.2924528301887, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI194018524, Length=296, Percent_Identity=27.7027027027027, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI11181770, Length=305, Percent_Identity=26.5573770491803, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI5032097, Length=350, Percent_Identity=24.5714285714286, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI21361693, Length=117, Percent_Identity=36.7521367521368, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI218563756, Length=342, Percent_Identity=25.1461988304094, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI197276625, Length=116, Percent_Identity=35.3448275862069, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI12408638, Length=275, Percent_Identity=24.7272727272727, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI289191353, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI55749589, Length=115, Percent_Identity=29.5652173913043, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=412, Percent_Identity=25.7281553398058, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17554804, Length=343, Percent_Identity=27.6967930029155, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI133952791, Length=435, Percent_Identity=24.8275862068966, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71995588, Length=415, Percent_Identity=23.6144578313253, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17555248, Length=116, Percent_Identity=37.9310344827586, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534083, Length=433, Percent_Identity=22.4018475750577, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17569475, Length=413, Percent_Identity=21.0653753026634, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542050, Length=145, Percent_Identity=29.6551724137931, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17136952, Length=376, Percent_Identity=27.3936170212766, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI281364394, Length=379, Percent_Identity=27.1767810026385, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI28574704, Length=379, Percent_Identity=27.1767810026385, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI17136950, Length=379, Percent_Identity=27.1767810026385, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI28574702, Length=379, Percent_Identity=27.1767810026385, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI24654186, Length=449, Percent_Identity=27.8396436525612, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24762620, Length=413, Percent_Identity=27.1186440677966, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI281365034, Length=414, Percent_Identity=26.3285024154589, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI19921936, Length=401, Percent_Identity=26.4339152119701, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24652942, Length=430, Percent_Identity=25.3488372093023, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45551088, Length=430, Percent_Identity=25.3488372093023, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24661428, Length=383, Percent_Identity=27.4151436031332, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI45551183, Length=402, Percent_Identity=23.8805970149254, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550877, Length=402, Percent_Identity=23.8805970149254, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24582567, Length=397, Percent_Identity=25.6926952141058, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI281363702, Length=378, Percent_Identity=25.9259259259259, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24639514, Length=507, Percent_Identity=23.8658777120316, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI221329674, Length=507, Percent_Identity=24.2603550295858, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI281364136, Length=402, Percent_Identity=25.1243781094527, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639516, Length=301, Percent_Identity=27.906976744186, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=27.6094276094276, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24639853, Length=404, Percent_Identity=23.7623762376238, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921352, Length=219, Percent_Identity=29.6803652968037, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24584353, Length=219, Percent_Identity=29.6803652968037, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24582569, Length=358, Percent_Identity=24.0223463687151, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49436; Mature: 49436

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]