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The map label for this gene is yxdM [H]

Identifier: 227815176

GI number: 227815176

Start: 2357143

End: 2357784

Strand: Reverse

Name: yxdM [H]

Synonym: BAMEG_2587

Alternate gene names: 227815176

Gene position: 2357784-2357143 (Counterclockwise)

Preceding gene: 227815177

Following gene: 227815175

Centisome position: 45.08

GC content: 32.24

Gene sequence:

>642_bases
TTGAATGAACGATTAAAAGTGAAAAAAATTAATACGTCTTCATTAAGTAAAATAATAAGAGGTAACGTTTATGTAATCTC
TAACAAGCAGTATGATGCATTACAAGATGGATTTAAAGAGGAAAAAAATTATGTATACAAAACAGAAGGAACGAAAGATG
AAATTGAGGTTGGTAAAGAACTAACACATCAGATGAAACCTTATGAAGAACATGCAACGTTTAGTGCAGAAGAGTACGCA
CAAAACCAAAGTTTACAAATTGCAGGACCAATTCTATTTGTAGGTTTCTTTATCGGTATTGTATTTTTCGTATGTGCAGG
AAGCTTCCTTTATTTCCGTTTGTTTTCTGATTTGGAGGATGATACTCGTTTGTTTGAAATGATTCGAAAAGTAGGTTTAA
CGAGTAGAGAATTATCGAAAGTAGTTACAATTCGATTGGCGCTTTTATTCTTTGTTCCAATAGGTGTTGCAACATTACAC
GGGGCAGTAGCGTTAACTGCACTCGGGCAGATGTTTGAGTACTCACTATTTAAAGAAAATACGATTGTATTAAGTATTTT
CGTAGGAATTCAAGTTGTATATTTCTTACTGATTCGATCTCGTTATTTAAAACAATTGAAAGAGAGATTATATATTCGTT
AA

Upstream 100 bases:

>100_bases
CAGGAGAACCCTTTCATGCGGTATCAAAAAAAGAAGTTTTATTTTTGTCAGTTGATATACCAGGACCACCGATGAAAGAA
AAGAAATTACGTTGCCGCAT

Downstream 100 bases:

>100_bases
ATGTGTTTTTTTAACTTGAGTACAAAATTTTCTAAAAAGAGGCAGGTATTACCAAAAAGTGATAAAATGGAAAAAGCGAG
GTGGAAAATTTAATAAAAAG

Product: ABC transporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNERLKVKKINTSSLSKIIRGNVYVISNKQYDALQDGFKEEKNYVYKTEGTKDEIEVGKELTHQMKPYEEHATFSAEEYA
QNQSLQIAGPILFVGFFIGIVFFVCAGSFLYFRLFSDLEDDTRLFEMIRKVGLTSRELSKVVTIRLALLFFVPIGVATLH
GAVALTALGQMFEYSLFKENTIVLSIFVGIQVVYFLLIRSRYLKQLKERLYIR

Sequences:

>Translated_213_residues
MNERLKVKKINTSSLSKIIRGNVYVISNKQYDALQDGFKEEKNYVYKTEGTKDEIEVGKELTHQMKPYEEHATFSAEEYA
QNQSLQIAGPILFVGFFIGIVFFVCAGSFLYFRLFSDLEDDTRLFEMIRKVGLTSRELSKVVTIRLALLFFVPIGVATLH
GAVALTALGQMFEYSLFKENTIVLSIFVGIQVVYFLLIRSRYLKQLKERLYIR
>Mature_213_residues
MNERLKVKKINTSSLSKIIRGNVYVISNKQYDALQDGFKEEKNYVYKTEGTKDEIEVGKELTHQMKPYEEHATFSAEEYA
QNQSLQIAGPILFVGFFIGIVFFVCAGSFLYFRLFSDLEDDTRLFEMIRKVGLTSRELSKVVTIRLALLFFVPIGVATLH
GAVALTALGQMFEYSLFKENTIVLSIFVGIQVVYFLLIRSRYLKQLKERLYIR

Specific function: Part of the ABC transporter complex yxdLM which could be involved in peptide resistance [H]

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 24557; Mature: 24557

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERLKVKKINTSSLSKIIRGNVYVISNKQYDALQDGFKEEKNYVYKTEGTKDEIEVGKE
CCCCEEEEECCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHH
LTHQMKPYEEHATFSAEEYAQNQSLQIAGPILFVGFFIGIVFFVCAGSFLYFRLFSDLED
HHHHCCCHHHHCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DTRLFEMIRKVGLTSRELSKVVTIRLALLFFVPIGVATLHGAVALTALGQMFEYSLFKEN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TIVLSIFVGIQVVYFLLIRSRYLKQLKERLYIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNERLKVKKINTSSLSKIIRGNVYVISNKQYDALQDGFKEEKNYVYKTEGTKDEIEVGKE
CCCCEEEEECCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHH
LTHQMKPYEEHATFSAEEYAQNQSLQIAGPILFVGFFIGIVFFVCAGSFLYFRLFSDLED
HHHHCCCHHHHCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DTRLFEMIRKVGLTSRELSKVVTIRLALLFFVPIGVATLHGAVALTALGQMFEYSLFKEN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TIVLSIFVGIQVVYFLLIRSRYLKQLKERLYIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377; 7952181 [H]