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The map label for this gene is nirD [H]

Identifier: 227815036

GI number: 227815036

Start: 2236952

End: 2237308

Strand: Direct

Name: nirD [H]

Synonym: BAMEG_2447

Alternate gene names: 227815036

Gene position: 2236952-2237308 (Clockwise)

Preceding gene: 227815035

Following gene: 227815037

Centisome position: 42.77

GC content: 36.97

Gene sequence:

>357_bases
ATGATACAAACGAAAGATAAAATAAAAGTTATGCGTGCAGAAGATCTTCCTATTCAAATCGGTAAAGAGGTCCAAATGAA
AGGTATGTCTATCGCCCTATTCCGCCTTTCAAATGGTGATATTCGAGCTGTAGAAAATCGTTGTCCTCATAAAAACGGAC
CATTAGCCGAAGGAATTGTATCTGGTGAATTCGTCTTTTGTCCGCTACATGATTGGAAGATTTCATTACTTACAGGTGAA
GTTCAAAAACCTGATGACGGTTGTATTCAAACGTACGAAGTAGAAGTCATTAATGGTGACATTTATATATATATATGTAA
TTTACAAAAGGAAGCCTCCCCCCTGGCTTCCTTTTAA

Upstream 100 bases:

>100_bases
CCGTGGCACATATAAAGAAGCTTGGGGACAAGCACTAGAAACGAAATCATTAAAAGCGATGTATGAAGTAGAAACTGTGA
AATAAGGAGCTGTGATCTAT

Downstream 100 bases:

>100_bases
ATAAAACTAGATGAGGTGCAATTATATGAACGGATATGTATATTTAGTTGGTGCAGGACCAGGTGATGAAGGGCTTATTA
CAAAGAAAGCGATAGAGTGT

Product: nitrite reductase [NAD(P)H], small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MIQTKDKIKVMRAEDLPIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVINGDIYIYICNLQKEASPLASF

Sequences:

>Translated_118_residues
MIQTKDKIKVMRAEDLPIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVINGDIYIYICNLQKEASPLASF
>Mature_118_residues
MIQTKDKIKVMRAEDLPIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVINGDIYIYICNLQKEASPLASF

Specific function: Required for nitrite assimilation. Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13211; Mature: 13211

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTKDKIKVMRAEDLPIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIV
CCCCCCCEEEEECCCCCEEECCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEE
SGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVINGDIYIYICNLQKEASPLASF
CCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIQTKDKIKVMRAEDLPIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIV
CCCCCCCEEEEECCCCCEEECCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEE
SGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVINGDIYIYICNLQKEASPLASF
CCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7868621; 8969502; 9384377 [H]