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The map label for this gene is intD [C]

Identifier: 227814871

GI number: 227814871

Start: 2083668

End: 2084030

Strand: Direct

Name: intD [C]

Synonym: BAMEG_2282

Alternate gene names: 227814871

Gene position: 2083668-2084030 (Clockwise)

Preceding gene: 227814870

Following gene: 227814872

Centisome position: 39.84

GC content: 36.91

Gene sequence:

>363_bases
TTGCTAGCTCTTCAAGAACATTTTCAGAAGATAAGTGAAGAAAAAGAACGGTATGGCGATGGATATAATAATTTTGATTT
AGTTTGTCCAACCTATAATGGTAACCCCTGCAATTTCAGAAGTTTGACACAGCTCTGGAAAAAGCTTATAAAGAAATGTG
GGGTTCCTGATATTCGTTTCCACGATCTACGGCATACCCATGCAACATTAATGTTAAAACAGGGTATTCACCCAAAAATC
GTAAGTGAACGATTAGGACATAAAAAAGTAGGTATCACATTGGACACCTACTCGCATGTCGTACCAGGCCTACAAGAAAA
AGCAGTCGAAGATTTTGCAAACAATCTATTTCAAAAACACTAA

Upstream 100 bases:

>100_bases
AACTCTATCAGTTAACCGTTCTCTCTCTCATATCACTAAAGAATTTCATGAACCTAAAACATCTTCAGGAAAAAGATTAA
TTGTTCTGCCTGAAATCACT

Downstream 100 bases:

>100_bases
TGTTTGCAAAATGTTTGCAATTACTGATTTTGCATAAAAATACTAGCTTATCCGTGTGACATTGAGAGGAGCCAAAAACA
TGAGAGAAATCAAGTCTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MLALQEHFQKISEEKERYGDGYNNFDLVCPTYNGNPCNFRSLTQLWKKLIKKCGVPDIRFHDLRHTHATLMLKQGIHPKI
VSERLGHKKVGITLDTYSHVVPGLQEKAVEDFANNLFQKH

Sequences:

>Translated_120_residues
MLALQEHFQKISEEKERYGDGYNNFDLVCPTYNGNPCNFRSLTQLWKKLIKKCGVPDIRFHDLRHTHATLMLKQGIHPKI
VSERLGHKKVGITLDTYSHVVPGLQEKAVEDFANNLFQKH
>Mature_120_residues
MLALQEHFQKISEEKERYGDGYNNFDLVCPTYNGNPCNFRSLTQLWKKLIKKCGVPDIRFHDLRHTHATLMLKQGIHPKI
VSERLGHKKVGITLDTYSHVVPGLQEKAVEDFANNLFQKH

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 13915; Mature: 13915

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALQEHFQKISEEKERYGDGYNNFDLVCPTYNGNPCNFRSLTQLWKKLIKKCGVPDIRF
CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
HDLRHTHATLMLKQGIHPKIVSERLGHKKVGITLDTYSHVVPGLQEKAVEDFANNLFQKH
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLALQEHFQKISEEKERYGDGYNNFDLVCPTYNGNPCNFRSLTQLWKKLIKKCGVPDIRF
CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
HDLRHTHATLMLKQGIHPKIVSERLGHKKVGITLDTYSHVVPGLQEKAVEDFANNLFQKH
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]