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The map label for this gene is ydfD [H]

Identifier: 227814515

GI number: 227814515

Start: 1748239

End: 1748523

Strand: Direct

Name: ydfD [H]

Synonym: BAMEG_1923

Alternate gene names: 227814515

Gene position: 1748239-1748523 (Clockwise)

Preceding gene: 227814498

Following gene: 227814516

Centisome position: 33.43

GC content: 34.74

Gene sequence:

>285_bases
ATGAAAGAAAAAATTGAAAATGGAGAATGGACAATTGGAAGTAAGATCCCTAGTCAAAGGCAGTTAGCAAAATTATTTCA
AGTAAATCGTAGCACTGTAATAACTGCACTAGATGAACTTATGGCTGATGGATTGATTCAAGGGAAAATTGGAGCAGGAA
CAATTGTAACGAATAATACATGGTCATTATTAGCAACAAATCCACCACCTGATTGGAGTGAATATGTAAAGGCCGGTATT
CATAAACCAAGCAAGTTAATGGTACGAGAAATAAATGAAGCATAA

Upstream 100 bases:

>100_bases
ATCGTAAAAACCAACCACTTGGTATTTTTCAAGTGAACGAAGGAGTTTTTTGATGACAACTAGCAAAAAACTGCCTAAGT
ATCGGCAGATAGTAGATTAT

Downstream 100 bases:

>100_bases
GCAAATAACAAGCTTATCCATCTTAGTAAAGGCGAACTTTCTCCTCATCTTTTTCCATTAGAAACGATGCAGTCCATTAT
GAAGAAAGTAAGTGAGGAAT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGI
HKPSKLMVREINEA

Sequences:

>Translated_94_residues
MKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGI
HKPSKLMVREINEA
>Mature_94_residues
MKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGI
HKPSKLMVREINEA

Specific function: Transcriptional Repressor For The Pyruvate Dehydrogenase Complex Genes ACEef And Lpd. [C]

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 10390; Mature: 10390

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNT
CCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCC
WSLLATNPPPDWSEYVKAGIHKPSKLMVREINEA
EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNT
CCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCC
WSLLATNPPPDWSEYVKAGIHKPSKLMVREINEA
EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]