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The map label for this gene is yliB [C]

Identifier: 227080801

GI number: 227080801

Start: 613102

End: 614772

Strand: Reverse

Name: yliB [C]

Synonym: VCM66_0578

Alternate gene names: 227080801

Gene position: 614772-613102 (Counterclockwise)

Preceding gene: 227080803

Following gene: 227080800

Centisome position: 21.25

GC content: 47.82

Gene sequence:

>1671_bases
ATGCTTGCCAATATTAAAAAGACAGCACTAGCCGCCGCAGTAATCGCAGCAGCAACCAGTGTTTCAGCTCCAGCGTTTGC
ACGTAGTGAGCTCACCATCGTGCCAGATTTCTACCCTACAATGGTACGTAACTTCAACCCGTACTTAGCGACTAACCTGC
GTACAACCACCGACTTTATCTATGAACCTCTGGTTGTATTCAATGAAATGAAAGGTAATACGCCTGTTTTCCGTCTGGCA
GAAAGCTACAAAATGGCTGACGACCTGATGAGCGTGACTTTCGATATCCGCAAAGGCGTTAAGTGGTCTGACGGTGAAGC
ATTCACAGCTGACGACGTGGTTTACTCTTTCGGCCTGCTGAAAGCGAAACCAGAACTTGATCAACGTGGTATCAACAAGT
GGGTTACCAGCGTTGAGAAAGTTGACGAATACAAAGTGCGTTTCCGTTTGTCTGAAGCAAACTCAAACGTACCTTATGAA
ATTTCTCTGATCCCTATCGTTGCTGAGCACGTGTGGAAAGACGTGAAAGATCCAACCACCTTCACTAACGAAAATCCAGT
AGGTACTGGTCCTTTCACCGTGATCGACACTTTCACTCCACAACTGTACATCCAGTGTCGTAACCCGAACTACTGGGATG
CCGCTAACCTAGAAGTTGACTGTCTGCGTGTTCCACAAATCGCAAACAACGACCAACTACTGGGCAAAATCGTTAACTCT
GAGCTCGACTGGACTTCTTCATTCGTTCCAGATATCGACCGTACTTACGCCGCAGCGAACCCTAACCACCACTACTGGTA
TCCAGCAGCGGGTACTCAGGCGTTCATGGTGAACTTCAAAAACCCAGATCCTGCGAAAAAAGAAGCACTGGATAACGTAG
ATTTCCGTCGTGCGTTCTCTATGGCTCTGGATCGTCAAACCATCATTGATATCGCCTTCTACGGCAGCGGTACTGTGAAC
GACTTCGCATCTGGCCTTGGCTACGCATTCGAAGCATGGTCTGATGAAGCGACCCACAAAAAGTACAAAGGCTTCAACAC
TTATGACGTTGAAGGCTCTAAGAAGCTACTGGCAAAAGCGGGCTTCAAAGATGTGAACGGTGACGGTTTCGTTGAAACTC
CATCAGGCAAATCTTTTGAACTGCTGATCCAATCTCCAAACGGCTGGACTGACTTTAACAACACAGTTCAACTGGCGGTT
GAGCAGCTACAAGAAGTGGGTATCAAAGCGAAAGCACGTACTCCTGAATTCGCGGTTTATAACCAAGCGATGCTAGAAGG
TACTTACGACGTTGCGTATACCAACTACTTCCACGGCGCTGACCCATTCACTTACTGGAACAGCGGCTACAACTCAGCTC
TACAATCTGGCGACGGTATGCCACGCTTTGCGATGCACTACTTCACCGATAAGAAGCTTGATGGTTTGCTAGACAGCTTC
TACAAAACAGCGGACAAGAACGAGCAGTTAGCGATCGCTCACGGTATTCAGAAGATCATTGCTGAAAACCAAGTGACTAT
CCCTGTAATGTCTGGTGCATGGATGTATCAGTACAACACCACTCGTTTCACTGGCTGGTGGAGCGAAGAAAATCCGAAGG
GCCGTCCAAGCGTTTGGGCTGGTATCCCAGAGCGTCTACTACACGTACTGGATCTGAAACCAGTTAAGTAA

Upstream 100 bases:

>100_bases
TCCGACGGGGTAAAAGTGATGAGGTAGGTCTTGGAGAGTGTTTATCAATTGATGACATTCCATCCATTAGTGAAATGAAA
GCAACTAGTAAGGAACAGCT

Downstream 100 bases:

>100_bases
TACACGTTCATTTCTTGCGGCGCACGCTGTGCGCCGCCTATCTAAATCCCCTCATGTTGTTAAGCAGACATATGGCGCTC
GTCGTCAGGGGATTTCTCGC

Product: peptide ABC transporter, periplasmic peptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLA
ESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE
ISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVN
DFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAV
EQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPERLLHVLDLKPVK

Sequences:

>Translated_556_residues
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLA
ESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE
ISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVN
DFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAV
EQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPERLLHVLDLKPVK
>Mature_556_residues
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLA
ESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE
ISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVN
DFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAV
EQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPERLLHVLDLKPVK

Specific function: Possible binding-protein with either a transport or enzymatic activity [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=542, Percent_Identity=23.0627306273063, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789966, Length=539, Percent_Identity=23.191094619666, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787762, Length=451, Percent_Identity=24.390243902439, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62513; Mature: 62513

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFI
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCEECCCCHHHHHH
YEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHH
KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTT
CCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCC
FTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
CCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCC
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFS
CCCCCCCCCCCCHHHEECCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHH
MALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKA
HHHCCCEEEEEEEECCCCHHHHHHHCCCEEECCCCCHHHHHHCCCCEEECCCCHHHHHHC
GFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVY
CCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHH
NQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
HHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHH
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWA
HHHCCCCCEEHHHHHHHHHHHCCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCHHC
GIPERLLHVLDLKPVK
CCHHHHHHHHCCCCCC
>Mature Secondary Structure
MLANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFI
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCEECCCCHHHHHH
YEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHH
KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTT
CCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCC
FTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNS
CCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCC
ELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFS
CCCCCCCCCCCCHHHEECCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHH
MALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKA
HHHCCCEEEEEEEECCCCHHHHHHHCCCEEECCCCCHHHHHHCCCCEEECCCCHHHHHHC
GFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVY
CCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHH
NQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSF
HHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHH
YKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWA
HHHCCCCCEEHHHHHHHHHHHCCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCHHC
GIPERLLHVLDLKPVK
CCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]