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The map label for this gene is yqgF [C]

Identifier: 227080676

GI number: 227080676

Start: 480565

End: 480987

Strand: Reverse

Name: yqgF [C]

Synonym: VCM66_0451

Alternate gene names: 227080676

Gene position: 480987-480565 (Counterclockwise)

Preceding gene: 227080677

Following gene: 227080671

Centisome position: 16.63

GC content: 51.54

Gene sequence:

>423_bases
ATGTCACGTACCGTTATGGCCTTTGATTACGGCACCAAAAGCATTGGCAGTGCAATCGGTCAAGAGATCACGGGCACGGC
GTCTCCGCTGAAAGCGTTTAAAGCCAATGATGGCATCCCCAATTGGGATGAAATTGAAAAGCAGATCAAAGAGTGGCAGC
CCAATTTATTGATTGTTGGCCTGCCTACCGATCTGCACGGCAAAGATCTGGACACCATCACCCCACGCGCAAAGAAATTC
GCTCAGCGTTTGCATGGCCGTTTTGGTTTGCCCGTAGAACTGCATGATGAGCGTCTTTCCACCACCGAAGCGCGCGCAGA
GCTGTTCGCCATGGGCGGTTACAAAGCACTGAGCAAAGGCAATGTGGACTGCCAATCGGCGGTGATCATTCTGGAAAGTT
GGTTTGAAAGTCAGTGGGGCTAA

Upstream 100 bases:

>100_bases
GCGACGCCGGACACGCCTAATAAAATCCAAGGCTGCGATCACGCAGCCTCATTTTTACTGTCATTTTTTATTGAACATTT
TTTATTAAAAGAGAAATCGC

Downstream 100 bases:

>100_bases
CCCCACTGCTTTTCTTGGCCGAGTAGAATCGCTGTGATTACTCAGCCAAGCCTTCCAATTTGATCAAAGCAAACTGCTTC
TTACCACGTTGCAACACATA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGLPTDLHGKDLDTITPRAKKF
AQRLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKGNVDCQSAVIILESWFESQWG

Sequences:

>Translated_140_residues
MSRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGLPTDLHGKDLDTITPRAKKF
AQRLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKGNVDCQSAVIILESWFESQWG
>Mature_139_residues
SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGLPTDLHGKDLDTITPRAKKFA
QRLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKGNVDCQSAVIILESWFESQWG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=139, Percent_Identity=62.589928057554, Blast_Score=182, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_VIBC3 (A5F9G8)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F9G8
- SMR:   A5F9G8
- STRING:   A5F9G8
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0018
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   VCHO345073:VC0395_A0018-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15506; Mature: 15375

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVG
CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKDLDTITPRAKKFAQRLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCHHHCCC
NVDCQSAVIILESWFESQWG
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRTVMAFDYGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVG
CCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKDLDTITPRAKKFAQRLHGRFGLPVELHDERLSTTEARAELFAMGGYKALSKG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCHHHCCC
NVDCQSAVIILESWFESQWG
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA