Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 227080671

GI number: 227080671

Start: 475329

End: 476039

Strand: Reverse

Name: yggS [C]

Synonym: VCM66_0446

Alternate gene names: 227080671

Gene position: 476039-475329 (Counterclockwise)

Preceding gene: 227080676

Following gene: 227080670

Centisome position: 16.46

GC content: 49.37

Gene sequence:

>711_bases
ATGCGTAGTATTCAACAAAACATTGAACATATCACTGCACAGATTGAGAGCGCACAACAAAAGTGTGGACGCGCTCGAAG
CAGTGTGCAACTTCTCGCGGTAAGTAAAACTAAACCCGTCGAGGCAATTCTTGAGGCGACTCAAGCAGGTCAACGCTACT
TTGGTGAGAATTATGTGCAGGAAGGCGTGGATAAAATCCGCTATTTTGCCGAACATCACCCGCAGTTAGCACTGGAGTGG
CACTTTATCGGTCCACTACAGTCGAATAAAACGCGCTTAGTGGCAGAGCATTTTGACTGGGTTCACACCATTGATCGCGA
GAAAATTGCCTTGCGCCTCAGTGAACAGCGCCCTGTGGATATGCCACCGCTGCAAGTGCTGATTCAGGTCAACACCAGCG
GTGAAGCCTCAAAATCTGGCATCGAACCGCAGCAATTATTTACATTAGCTGAATTGATTTCTCGTCTGCCAAACCTCACC
TTAAGAGGGCTGATGTCAATTCCTGAGAACGTGCCGGATTACCCTGCGCAACTGGCGGCATTTTCCCAATTAGCCGAATT
GCAGCAACAACTGGCTCAGAAACACCCACAGATTGACACCTTATCCATGGGTATGAGTGGCGATATGCAAGCAGCGATTG
AAGCAGGCAGCACGATAGTGCGTATTGGTACCGCGATTTTCGGCGAGCGCGATTACAGCCGCAACGCTTAA

Upstream 100 bases:

>100_bases
CGGAACACCTGCGGAAAGATGTAGATCTGAGGCGTTATGTTTTACACTAAATTCCAGTAACTCAGCGATATCCATTTAAA
TTCCTTAATAAAGTCTGGCT

Downstream 100 bases:

>100_bases
CGTTTGGGATGCTCGTTGCAACGAGTGCCCCTTTTAGATTTGAGAGTATCGAATGGAACAGAGAAGCATCGCCTTTATTG
GCGCAGGTAACATGGCACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRSIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEW
HFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLT
LRGLMSIPENVPDYPAQLAAFSQLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSRNA

Sequences:

>Translated_236_residues
MRSIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEW
HFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLT
LRGLMSIPENVPDYPAQLAAFSQLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSRNA
>Mature_236_residues
MRSIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEW
HFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLT
LRGLMSIPENVPDYPAQLAAFSQLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSRNA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=220, Percent_Identity=42.2727272727273, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=59.4017094017094, Blast_Score=279, Evalue=1e-76,
Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=38.5593220338983, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=214, Percent_Identity=37.8504672897196, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=44.4444444444444, Blast_Score=154, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26381; Mature: 26381

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVD
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHEEECCCCCCC
MPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH
FSQLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSRNA
HHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVD
HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHEEECCCCCCC
MPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH
FSQLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSRNA
HHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]