| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227080514
Identifier: 227080514
GI number: 227080514
Start: 292637
End: 294460
Strand: Reverse
Name: 227080514
Synonym: VCM66_0285
Alternate gene names: NA
Gene position: 294460-292637 (Counterclockwise)
Preceding gene: 227080515
Following gene: 227080513
Centisome position: 10.18
GC content: 50.99
Gene sequence:
>1824_bases ATGCCTGATAAATTCAATATGCAGTCACCACCGTTTAATCGACTGACGGCTGAGCAGCAACATCAATTGCGCAGTGCTTT GGATGTCGCCTATTTCCGCCAACGCGATGTGTTGATTGATGCGCAGCACCCTGTGACTCATCTGCATATTCTGATCAAAG GCACGGTAGAGGAACGCAGCCCCGACGGCAAAGAGGTGTTTGCACACTACGCCAATGATGATCTGTTTGATGTACGCGCC ATGTTTGAAGAACTGAGCAAACATCAATATATGGCGCTCGAAGACACCCTCTCCTACTTGCTGCCCAAATCGATTTTTTT GCAGCTGTACGAGCAAAATGGCGAGTTCGCCGCCTATTTCGATAATAACCTCGCCAAACGGCAAGAGTTGATTGAAGCCG CGGCTCAGCAGAAAAACATTGCCGAATTCATTCTGACCAAAGTCGACCGTTCCATTTATCACCCGCCTTTTATTCTGTCG CCGGAGCAGCCGATCCACAGCGTCACACAACAACTCAAAGAGCGCGGGATTGATGCGGCTTTAGTCGAACTCCATCCCAG CGACCCAAGATTGGCGCACAACCACGCTCACCCTTATGCGATTGTAACGCGAACCAATATGCTGCATGCAGTGATGCTTG AAGGCCGCCCTTTGGATACGCCCGTCGGCGAGATTGCCACTTTTCCGGTATTGCACGTGGATGAGGGTGACTTCTTGTTC AATGCCATGGTGATGATGACGCGCCAACGCATCAAGCGAGTCATGGTGTGCCTGGGCAATCAAGCCGTGGGTTTACTGTC GCTGATTCAAATACTGAGCGCCTTCTCTACTCACTCTCATGTTTTGACACTGGCGATTGCGCGTGCAGCCTCGATTGATG AACTGGCACTTGCCGCCAACAAACAGCGCGAACTGGTCGAAAGCCTGATGTCACGAGGGGTTCGCACCCGTTTTGTGATG GAACTGATTGCCGCAGTCAATGAGCAGATCATCGAGAAAGCCTTTGAGTTAGTGGTTCCTCCAGCGTTGCACGATCAGTG CTGCCTAGTAGTGCTCGGCTCGGAAGGACGTGGCGAGCAGATCCTCAAAACCGATCAAGACAACGCGCTCATCATTCAAG ATGGTTTGGAATGGCACCAGTGCCAGCCCATCATGGAGACGCTCACCCATACCCTGCTGCAGCTCGGCTATCCCCTGTGT CCCGGCAAAGTGATGGTCAATAACCCGAAATGGGTGCGCAGCCAGAGCGATTGGAAACGCACTCTGACTGATTGGGTAAA AGCCGCTCGCCCCGAACAAGTGATGGATATTGCCATTTTTGCTGACGCGCATGCGGTGGCAGGAAATCGTGCGCTGCTTG CGCCTGTGAAAGCGCATTTGCAGCACTTGATGGCCGGTCAAGAGCTCATCTTGGCGGAATTTACTCGCCCAGCACTCAAT TTTTCCGTACCGCTGACCCTGTTTGGTAACGTAAAAAGCAGCAAGCAAGGGATTGATATAAAGCAAGGCGGGATTTTCCC TATCGTACACGGCGTGCGCGCTTTAAGTTTGGAGCACGCGATTGATGCCAATAACACCTTTGATCGGATTGAAGCTTTAG TCAAAAAACGAGTTTTAGAACAAGAGACTGGCGATAACTTAAGTGAAGCCTTTAAGCTGTTTTTAAAACTGCGCCTTGCC CAGCAGCTTGGCAATCAGCACAGCACCAACCAACTCGACTTCAAACAACTCGACCGCACTGAACGCGATTTATTGCGCCA TAGCCTGCATGTGGTGAAAAAATTTAAGCAGTGGCTCGGTTATCACTATCAAATTCGCGATTGA
Upstream 100 bases:
>100_bases TAGAAAAGCCTTTGTTGCCTGCATTAGACCAAAGTCGTCTGGAGGGGCAGGGGAAATTTGTCACACTTAGTGAACCTGTC CCGATGATGAGTGCCACCTC
Downstream 100 bases:
>100_bases GGTGGCTGATGAACTGGTTATTACGCCGTTATTGGCACGCGAAACTCAAAGGTTCTCCCTATCAACGGCTGTTTGAAACC GCGCGCCATCACGAGTACGT
Product: hypothetical protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRA MFEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILS PEQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLF NAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVM ELIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLC PGKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALN FSVPLTLFGNVKSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLA QQLGNQHSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD
Sequences:
>Translated_607_residues MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRA MFEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILS PEQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLF NAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVM ELIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLC PGKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALN FSVPLTLFGNVKSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLA QQLGNQHSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD >Mature_606_residues PDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDGKEVFAHYANDDLFDVRAM FEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSP EQPIHSVTQQLKERGIDAALVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLFN AMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAANKQRELVESLMSRGVRTRFVME LIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLCP GKVMVNNPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALNF SVPLTLFGNVKSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQ QLGNQHSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLGYHYQIRD
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68800; Mature: 68669
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERS CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECHHCCC PDGKEVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYF CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE DNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCEE LVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLF EEEECCCCCCCCCCCCCCEEEEEECCCEEEHEECCCCCCCCHHHHHHCCEEEECCCHHHH NAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAAN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHC KQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC ILKTDQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLCPGKVMVNNPKWVRSQSDWKR CCCCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHCCCHHHHHH TLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALN HHHHHHHHCCCHHHHEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC FSVPLTLFGNVKSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLE CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QETGDNLSEAFKLFLKLRLAQQLGNQHSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLG HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC YHYQIRD CCEEECC >Mature Secondary Structure PDKFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERS CCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECHHCCC PDGKEVFAHYANDDLFDVRAMFEELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYF CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE DNNLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCEE LVELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLF EEEECCCCCCCCCCCCCCEEEEEECCCEEEHEECCCCCCCCHHHHHHCCEEEECCCHHHH NAMVMMTRQRIKRVMVCLGNQAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELALAAN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHC KQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFELVVPPALHDQCCLVVLGSEGRGEQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC ILKTDQDNALIIQDGLEWHQCQPIMETLTHTLLQLGYPLCPGKVMVNNPKWVRSQSDWKR CCCCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHCCCHHHHHH TLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQELILAEFTRPALN HHHHHHHHCCCHHHHEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC FSVPLTLFGNVKSSKQGIDIKQGGIFPIVHGVRALSLEHAIDANNTFDRIEALVKKRVLE CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QETGDNLSEAFKLFLKLRLAQQLGNQHSTNQLDFKQLDRTERDLLRHSLHVVKKFKQWLG HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC YHYQIRD CCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA