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The map label for this gene is ygbN [H]

Identifier: 227080500

GI number: 227080500

Start: 279565

End: 280941

Strand: Reverse

Name: ygbN [H]

Synonym: VCM66_0271

Alternate gene names: 227080500

Gene position: 280941-279565 (Counterclockwise)

Preceding gene: 227080503

Following gene: 227080499

Centisome position: 9.71

GC content: 54.68

Gene sequence:

>1377_bases
ATGGACCCCTTACTACAAACCTCTGATCCTACGTATCTATTAACCGTGGCGGCGGTCGCCATTATTGCGCTACTGCTGCT
GATTATTCGTTTTAAAATCCACGCTTTTGCTTCATTGACCTTAGTCAGTTTAGGCACTGCGATCGCCACTGGCGTGGCGT
CTGACAAAGTGGTGTCGACCATGATGACAGGCTTTGGTGGCACGCTGGCTTCGGTCGCGCTGCTGGTCGGCCTTGGCGCT
ATGATTGGTAAAATCTTGGAAGTGACGGGCGGTGCGAAAGTGCTGGCAGACACGCTGATCGGCCGCTTTGGCGAGCAGCG
CGCACCGTTTGCGCTCGGTGTGGCATCACTACTGTTTGGCTTCCCCATCTTCTTTGATGCGGGCCTGATTGTGATGATGC
CGATCATCTTCAGCGTCGCGAAACGCTTTGGTGGCTCACCCCTTAAATACGCGCTGCCTTCCGCCGGTGCGTTTGCGGTC
ATGCACGCCTTTGTGCCACCGCATCCGGGACCAGTTGCCGCGGCAGAACTGCTCGGCGCAAACATCGGCTTGCTGCTGAT
TGTTGGCTTACTCGTAGCCATCCCGACTTGGTACTTGGGTGCTTATCTATTTGGTCTGTATGCCGGTCAGAAATTCGATA
TTCCTTTGTCGAAAGCCTTCTTCAATACCGATGCGATCATTGACGAAGCCAAGCTACCAAAATTTGCCACGGTCATGACC
ATTCTGGTGCTGCCGGTGCTGCTGATTTTTATGGATACCGGTTTGAACACCCTTGCGGTCGCGGGCATGATTGATGGTAA
AGCTCCCGCAGTCGAATTCCTGCGTATGCTGGGTAAAACACCGATTGCTCTGCTGATCACTCTGCTCGTCTGTATCGCAG
CGTTCGCCAAAGATTACGGCATGGCACGCCTAGAAAAACTGTGTGGTGACTCGCTTGCCCCCATCTGCGCGGTGATTTTA
GTCACCGGTGCGGGCGGCATGTTCGGTGGCGTACTGCGCGCAAGCGGCATTGGTAGCGCACTGGCTGGCGTGCTGTCGGA
TACTGGTATGCCCGTTGTGGTCGCCGCGTTTGTGATTGCGACCTGTTTACGCGTCGCGCAAGGTTCGGCCACGGTCGCTC
TGACCACGACCGCCGCCCTGATTGCACCGACGGTGGCAGCGACCACAGGCCTGTCTGAGCTTGACCTGTGCTTTATCGTG
ATTTCGATTGCCGGCGGTGCTACTGTACTTTCACACTTTAACGATTCTGGTTTCTGGCTGGTGTCGCGTTTGATGGAGAT
GGATGAGAAAACCACTCTAAAAACGTGGACTGTGATGGAAACCCTTTTGGGCGGTATTGCCTTCCTGATTGTGGCAACAC
TCAGCTTTATTCTGTAG

Upstream 100 bases:

>100_bases
GAAATATGGGTTTATCTTATTCATGTTATGGGTAACATGTTACCGGTAACTTCACTAAATGTGAGCTATAACACAAACTA
TAAATCTGGACGGTGAACTC

Downstream 100 bases:

>100_bases
AGGTATGGACTCATGACCATTGAACAACGCTTACGAGCGATCAAAATTGTCCCTGTTATTGCGATTAATGATGTCGCCCA
CGCACTGCCACTGGCCAAAG

Product: putative gluconate permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSLGTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGA
MIGKILEVTGGAKVLADTLIGRFGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGQKFDIPLSKAFFNTDAIIDEAKLPKFATVMT
ILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRMLGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVIL
VTGAGGMFGGVLRASGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLSELDLCFIV
ISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLIVATLSFIL

Sequences:

>Translated_458_residues
MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSLGTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGA
MIGKILEVTGGAKVLADTLIGRFGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGQKFDIPLSKAFFNTDAIIDEAKLPKFATVMT
ILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRMLGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVIL
VTGAGGMFGGVLRASGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLSELDLCFIV
ISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLIVATLSFIL
>Mature_458_residues
MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSLGTAIATGVASDKVVSTMMTGFGGTLASVALLVGLGA
MIGKILEVTGGAKVLADTLIGRFGEQRAPFALGVASLLFGFPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAV
MHAFVPPHPGPVAAAELLGANIGLLLIVGLLVAIPTWYLGAYLFGLYAGQKFDIPLSKAFFNTDAIIDEAKLPKFATVMT
ILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRMLGKTPIALLITLLVCIAAFAKDYGMARLEKLCGDSLAPICAVIL
VTGAGGMFGGVLRASGIGSALAGVLSDTGMPVVVAAFVIATCLRVAQGSATVALTTTAALIAPTVAATTGLSELDLCFIV
ISIAGGATVLSHFNDSGFWLVSRLMEMDEKTTLKTWTVMETLLGGIAFLIVATLSFIL

Specific function: Unknown

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI1789097, Length=451, Percent_Identity=37.9157427937916, Blast_Score=261, Evalue=7e-71,
Organism=Escherichia coli, GI48994939, Length=448, Percent_Identity=34.375, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI48994935, Length=437, Percent_Identity=35.2402745995423, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1790716, Length=437, Percent_Identity=32.2654462242563, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI2367370, Length=434, Percent_Identity=32.4884792626728, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI1790776, Length=438, Percent_Identity=28.7671232876712, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1788707, Length=423, Percent_Identity=30.2600472813239, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 47289; Mature: 47289

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDPLLQTSDPTYLLTVAAVAIIALLLLIIRFKIHAFASLTLVSLGTAIATGVASDKVVST
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MMTGFGGTLASVALLVGLGAMIGKILEVTGGAKVLADTLIGRFGEQRAPFALGVASLLFG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FPIFFDAGLIVMMPIIFSVAKRFGGSPLKYALPSAGAFAVMHAFVPPHPGPVAAAELLGA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCC
NIGLLLIVGLLVAIPTWYLGAYLFGLYAGQKFDIPLSKAFFNTDAIIDEAKLPKFATVMT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHCCCHHHHHHH
ILVLPVLLIFMDTGLNTLAVAGMIDGKAPAVEFLRMLGKTPIALLITLLVCIAAFAKDYG
HHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MARLEKLCGDSLAPICAVILVTGAGGMFGGVLRASGIGSALAGVLSDTGMPVVVAAFVIA
HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH
TCLRVAQGSATVALTTTAALIAPTVAATTGLSELDLCFIVISIAGGATVLSHFNDSGFWL
HHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHH
VSRLMEMDEKTTLKTWTVMETLLGGIAFLIVATLSFIL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]