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The map label for this gene is yihI

Identifier: 227080350

GI number: 227080350

Start: 108885

End: 109433

Strand: Direct

Name: yihI

Synonym: VCM66_0114

Alternate gene names: 227080350

Gene position: 108885-109433 (Clockwise)

Preceding gene: 227080349

Following gene: 227080351

Centisome position: 3.76

GC content: 51.18

Gene sequence:

>549_bases
ATGAGTCGCTCAAAAAAATCGAGAAAACCGGGTACCAACAGTAACGATCAACTGGTCGTGGTACGTACACGCAGCGAATC
CGAATTGGAAAGCCGCCTGCGTAAAAAACTGAAAAAGCGTAAAGGCTTAAAGTCAGGCAGCCGCCATTCAGAAGGCAGTG
AAAGCCAAGTGCGCCAAGCGGCGCAAAAGCGCGACCCGCGTTTGGGTAGCAAAAAGCCGATTCCATTGATTGTGGCAGAG
CCGAAGAAGCTCAATAAGCAAGAGCGCAAACTGGCGGCTGAGCAAGAGCTAGCGATGCTAGAGAAAGACGCGCAACTCAA
CGTGCTGCTCGACCGACTCGACAACGGCGAAAAGCTCGGGATTGGCTTGCAGAAATACGTGGATGAGAAGCTGGATCGCA
TTGAAGTGCTGATGGAGCAGTTGGGCTTGCTCGACGATGAACCAGAGCCAGCGCCGGCACCACAGTCAAAACCGACTAAA
AAGCGCAAAACTGAAGACGATCTATTGTCTGAGTTTGAGCAGCTGGATGTGGATAAGTACCAAGATTAA

Upstream 100 bases:

>100_bases
TCTTTTTTAGTCGTGCTACGTTTCAGTATCTGGCGGAGCGGGATCAGCTCGAACTTGAATTTATTGGTAATGATGTAATT
TTACTGAGGAAAACCCAGTA

Downstream 100 bases:

>100_bases
GGAGCGGTGATGAACGGGATGCTACTGGCTAGTGTGGGCGGTGCCATTATCGTGGCATTGGCCAGCTATGCAGCTTACTT
GCTGTGGCAAGTGAAAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAE
PKKLNKQERKLAAEQELAMLEKDAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTK
KRKTEDDLLSEFEQLDVDKYQD

Sequences:

>Translated_182_residues
MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAE
PKKLNKQERKLAAEQELAMLEKDAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTK
KRKTEDDLLSEFEQLDVDKYQD
>Mature_181_residues
SRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEGSESQVRQAAQKRDPRLGSKKPIPLIVAEP
KKLNKQERKLAAEQELAMLEKDAQLNVLLDRLDNGEKLGIGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTKK
RKTEDDLLSEFEQLDVDKYQD

Specific function: A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis

COG id: COG3078

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YihI family

Homologues:

Organism=Escherichia coli, GI1790297, Length=129, Percent_Identity=44.1860465116279, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHI_VIBC3 (A5F4H7)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F4H7
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2404
- eggNOG:   COG3078
- HOGENOM:   HBG303443
- OMA:   AQKKDPR
- ProtClustDB:   PRK05244
- BioCyc:   VCHO345073:VC0395_A2404-MONOMER
- HAMAP:   MF_01058
- InterPro:   IPR007336

Pfam domain/function: PF04220 DUF414

EC number: NA

Molecular weight: Translated: 20751; Mature: 20620

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEGSESQVRQA
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AQKRDPRLGSKKPIPLIVAEPKKLNKQERKLAAEQELAMLEKDAQLNVLLDRLDNGEKLG
HHHCCCCCCCCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
IGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTKKRKTEDDLLSEFEQLDVDKY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHCC
QD
CC
>Mature Secondary Structure 
SRSKKSRKPGTNSNDQLVVVRTRSESELESRLRKKLKKRKGLKSGSRHSEGSESQVRQA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AQKRDPRLGSKKPIPLIVAEPKKLNKQERKLAAEQELAMLEKDAQLNVLLDRLDNGEKLG
HHHCCCCCCCCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
IGLQKYVDEKLDRIEVLMEQLGLLDDEPEPAPAPQSKPTKKRKTEDDLLSEFEQLDVDKY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHCC
QD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA