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The map label for this gene is smf [H]

Identifier: 227080285

GI number: 227080285

Start: 46074

End: 47189

Strand: Direct

Name: smf [H]

Synonym: VCM66_0048

Alternate gene names: 227080285

Gene position: 46074-47189 (Clockwise)

Preceding gene: 227080284

Following gene: 227080286

Centisome position: 1.59

GC content: 51.52

Gene sequence:

>1116_bases
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCTGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAACAAGCCGAGCAGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAACTCATCGCCTCCCGTCCTGTTTATTGAAGGAATATG
GGAAGCGGTGCATGACCCTGCGGTGGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGATT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCGCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGTTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCGCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGTCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Upstream 100 bases:

>100_bases
CTGAAGTGCATGCACTGTCTCCGCAGGCAGAGCCTCAAACCGAGCAGCCAGATGTAGTGCAATTGTCTGAACAAATCGAT
TTGGTTGATGATGCCAGTTA

Downstream 100 bases:

>100_bases
CTATGATGATGGATATTCTGATGTATCTGTTCGAAACCTACGTCCATAGCGATGCAGATTTGCAAGTGGATCAGGACCAG
CTGGAAGATGAACTGCTGCG

Product: smf protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Sequences:

>Translated_371_residues
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG
>Mature_371_residues
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=310, Percent_Identity=49.3548387096774, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 40005; Mature: 40005

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHCCCCCCCEEEEEHHH
AKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGS
HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEEEC
RNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDGALQAQGQTVAVLGSGLAQVY
CCCCCCHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCEECCCCEEEEECCCHHHHC
PKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
CHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCEEE
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVP
EEEHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
YQATLFSAVQGDEELPFPELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVA
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
VPGGYIRKGRG
CCCCCCCCCCC
>Mature Secondary Structure
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHCCCCCCCEEEEEHHH
AKQAEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGS
HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEEEC
RNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDGALQAQGQTVAVLGSGLAQVY
CCCCCCHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCEECCCCEEEEECCCHHHHC
PKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
CHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCEEE
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVP
EEEHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
YQATLFSAVQGDEELPFPELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVA
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
VPGGYIRKGRG
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]