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The map label for this gene is yqiR [H]

Identifier: 226950891

GI number: 226950891

Start: 3948175

End: 3950184

Strand: Direct

Name: yqiR [H]

Synonym: CLM_3906

Alternate gene names: 226950891

Gene position: 3948175-3950184 (Clockwise)

Preceding gene: 226950884

Following gene: 226950960

Centisome position: 95.02

GC content: 27.31

Gene sequence:

>2010_bases
ATGTATAAAAATAATATAGTAGTTCCTATTAATAATGGCATACATACAAGAATAGCTGCCATGATAGTTCATAAAGCTAC
AGAAATAAAGAATAAATATGGTCTAGACCTCTATATAAAAAGGATGGATTCTAGAGAACCTTTAGCTATTAGTATGTTAG
CTCTGATTTCTTTAAAAATAAAACAACATGAAATAATAGAAATATCCTGCAATAGTGATTCTTCTAAAGCTGAGAGTGCA
GTTTTGGAATTATGCAATTTTATCAATTATGACATATCAAAGGAAAATCCTACATCAAAACTAGATGACATTATAGAGGA
AAACACTATAGCCTATGATCAAATATTTACTAATATTCCTATAGGTATATTGGTAATAGATAAAAATAGTAAGATTACCA
TGGCTAATGACTATTCATTAAAAATTATAGGATATTCTTTAAAGGATATATTAGGTAAAAACATTAAGGATATAATACCA
AGTTCTGAGTTGCCTGATATAATTAAAAATAAATGCTATCATAAAGGTAAAACACAATACATGGACAATAGAATATTAAT
AACCAATAGATCCCCTATATATTTTAATGATAAAATTTTAGGCGCTATAAGTGTATTTCAAGATATTTCTGAACTTGTAG
GCATAAAAGAGCTAAACGAAAAATTTAAAAAAATATTAGAAGCCTCCCATGATTTAATTTGTTTTGTAGATGAAGATGGT
AAAATAATATATGTTAATCCCTCCTACAAAAAACATTTTTCTATAAATTCTAAAGACATTATTGGTAAAGATGTAAAAGA
ATCCCATATAAATAGTCTTATAATGGAGGTATTTAATACTAAAAGACCAAAGGAAAATGTAATCTATAATAAAGATAATA
TAAATATTATATCTACTATAGAACCTATTTTTATTGATAATGAATTTAAAGGTGTAATTTCTATATCTAAAACTGTAGAT
GAATTAAGAGATTTAACCTTAAAACTTACGGAATCTGAAGAAAAACTTATGTACTATAAAAATGAATTAACCAGACATCT
TCCCTTAAGTTCTTCCTTTAAGTCTATAATAGGTTGGAATAGTTCCTTAAAAGATTGTTTATCTATAGCAGAAAAAGCTT
CTAAATCAACTTCTACTGTTCTTGTTAGAGGAGAAAGTGGTACCGGAAAAGAAATTATAGCTAATGCTATACACGATAAT
AGTCCTAGAAAAAATAGATCTTTTGTTAGAGTAAACTGTGCAGCCATACCAGAGAATCTTTTAGAAAGTGAACTTTTTGG
TTTTGAAAAGGGAGCCTTTACAGGGGCTATAAAAAAGAAGCCTGGTAAATTTAATATTGCAGATGGAGGCACAATCTTTT
TAGATGAAATAGGTGATCTACCTATTTCTATGCAGGTAAAACTGTTAAGAGTCCTTCAAGAAAAAGAGTTTGAAAGTATA
GGAGGAATTAAAACTCAAAGGGTAGATGTTAGAATAATTGCTGCTACTAATAGAAACTTAGAAGATATGATTAAAAATAA
TACCTTCAGAGAAGACCTTTATTATAGACTAAATGTTTTAAATATATCTTTGCCCCCTCTTCGTCATAGAAAACAAGATA
TAAATCTTTTGGTAGAACACTTTATAAATAAAATTAATCCTAAACTTAATAAAAACATAGTAGGTATAAATAAGGAAGCT
CTTTCAAAATTACAACAGTACGATTGGCCTGGAAATATACGCGAATTGGAAAATATCGTTGAAAGGGCTATGAATATGTG
TGATAAATCTATAATAACTGTTAAAGATTTACCTTTTTATATATCTAATAACTCTTTTGATGATAGCTATAACTTTACTA
TAAATGAAGACAACTTAAAAACACTAGAAGAATATGAAAAAGAAATAATTACTTTAGCTATGAAAAGATACAAAAGTTTT
AATAGGGCAGGTAAAGCCCTAGGCGTAACTCACAGAACAGTGTCTCTAAAATGTAAAAAATATAATATAAGTCCAGAAAT
TTATAAATAG

Upstream 100 bases:

>100_bases
ATTTATTATATTTCATAGTATATAATTATAGTATTAATAAGTTGATATTTTTTAGCATATTATAATATATTTTGATATTT
TTTATCAAGGAGATGTTTTC

Downstream 100 bases:

>100_bases
CATTTTATTATAAAAATACCTAAATAAAAAAGATTTAAAATTAAATTTTAAATCTTTTTATTTATCCTTAAATTCAACTA
TATCTTTATATTAATAAAAT

Product: putative sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 669; Mature: 669

Protein sequence:

>669_residues
MYKNNIVVPINNGIHTRIAAMIVHKATEIKNKYGLDLYIKRMDSREPLAISMLALISLKIKQHEIIEISCNSDSSKAESA
VLELCNFINYDISKENPTSKLDDIIEENTIAYDQIFTNIPIGILVIDKNSKITMANDYSLKIIGYSLKDILGKNIKDIIP
SSELPDIIKNKCYHKGKTQYMDNRILITNRSPIYFNDKILGAISVFQDISELVGIKELNEKFKKILEASHDLICFVDEDG
KIIYVNPSYKKHFSINSKDIIGKDVKESHINSLIMEVFNTKRPKENVIYNKDNINIISTIEPIFIDNEFKGVISISKTVD
ELRDLTLKLTESEEKLMYYKNELTRHLPLSSSFKSIIGWNSSLKDCLSIAEKASKSTSTVLVRGESGTGKEIIANAIHDN
SPRKNRSFVRVNCAAIPENLLESELFGFEKGAFTGAIKKKPGKFNIADGGTIFLDEIGDLPISMQVKLLRVLQEKEFESI
GGIKTQRVDVRIIAATNRNLEDMIKNNTFREDLYYRLNVLNISLPPLRHRKQDINLLVEHFINKINPKLNKNIVGINKEA
LSKLQQYDWPGNIRELENIVERAMNMCDKSIITVKDLPFYISNNSFDDSYNFTINEDNLKTLEEYEKEIITLAMKRYKSF
NRAGKALGVTHRTVSLKCKKYNISPEIYK

Sequences:

>Translated_669_residues
MYKNNIVVPINNGIHTRIAAMIVHKATEIKNKYGLDLYIKRMDSREPLAISMLALISLKIKQHEIIEISCNSDSSKAESA
VLELCNFINYDISKENPTSKLDDIIEENTIAYDQIFTNIPIGILVIDKNSKITMANDYSLKIIGYSLKDILGKNIKDIIP
SSELPDIIKNKCYHKGKTQYMDNRILITNRSPIYFNDKILGAISVFQDISELVGIKELNEKFKKILEASHDLICFVDEDG
KIIYVNPSYKKHFSINSKDIIGKDVKESHINSLIMEVFNTKRPKENVIYNKDNINIISTIEPIFIDNEFKGVISISKTVD
ELRDLTLKLTESEEKLMYYKNELTRHLPLSSSFKSIIGWNSSLKDCLSIAEKASKSTSTVLVRGESGTGKEIIANAIHDN
SPRKNRSFVRVNCAAIPENLLESELFGFEKGAFTGAIKKKPGKFNIADGGTIFLDEIGDLPISMQVKLLRVLQEKEFESI
GGIKTQRVDVRIIAATNRNLEDMIKNNTFREDLYYRLNVLNISLPPLRHRKQDINLLVEHFINKINPKLNKNIVGINKEA
LSKLQQYDWPGNIRELENIVERAMNMCDKSIITVKDLPFYISNNSFDDSYNFTINEDNLKTLEEYEKEIITLAMKRYKSF
NRAGKALGVTHRTVSLKCKKYNISPEIYK
>Mature_669_residues
MYKNNIVVPINNGIHTRIAAMIVHKATEIKNKYGLDLYIKRMDSREPLAISMLALISLKIKQHEIIEISCNSDSSKAESA
VLELCNFINYDISKENPTSKLDDIIEENTIAYDQIFTNIPIGILVIDKNSKITMANDYSLKIIGYSLKDILGKNIKDIIP
SSELPDIIKNKCYHKGKTQYMDNRILITNRSPIYFNDKILGAISVFQDISELVGIKELNEKFKKILEASHDLICFVDEDG
KIIYVNPSYKKHFSINSKDIIGKDVKESHINSLIMEVFNTKRPKENVIYNKDNINIISTIEPIFIDNEFKGVISISKTVD
ELRDLTLKLTESEEKLMYYKNELTRHLPLSSSFKSIIGWNSSLKDCLSIAEKASKSTSTVLVRGESGTGKEIIANAIHDN
SPRKNRSFVRVNCAAIPENLLESELFGFEKGAFTGAIKKKPGKFNIADGGTIFLDEIGDLPISMQVKLLRVLQEKEFESI
GGIKTQRVDVRIIAATNRNLEDMIKNNTFREDLYYRLNVLNISLPPLRHRKQDINLLVEHFINKINPKLNKNIVGINKEA
LSKLQQYDWPGNIRELENIVERAMNMCDKSIITVKDLPFYISNNSFDDSYNFTINEDNLKTLEEYEKEIITLAMKRYKSF
NRAGKALGVTHRTVSLKCKKYNISPEIYK

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=339, Percent_Identity=46.6076696165192, Blast_Score=294, Evalue=1e-80,
Organism=Escherichia coli, GI87082117, Length=261, Percent_Identity=52.8735632183908, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI1790437, Length=334, Percent_Identity=41.9161676646707, Blast_Score=273, Evalue=4e-74,
Organism=Escherichia coli, GI1789087, Length=313, Percent_Identity=45.0479233226837, Blast_Score=269, Evalue=5e-73,
Organism=Escherichia coli, GI1790299, Length=348, Percent_Identity=37.9310344827586, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1789233, Length=326, Percent_Identity=42.0245398773006, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1788905, Length=240, Percent_Identity=43.3333333333333, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI87082152, Length=289, Percent_Identity=39.7923875432526, Blast_Score=221, Evalue=2e-58,
Organism=Escherichia coli, GI1787583, Length=328, Percent_Identity=36.280487804878, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1786524, Length=222, Percent_Identity=47.7477477477478, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI87081872, Length=322, Percent_Identity=38.1987577639752, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI87081858, Length=460, Percent_Identity=24.1304347826087, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1789828, Length=231, Percent_Identity=35.4978354978355, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 76360; Mature: 76360

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNNIVVPINNGIHTRIAAMIVHKATEIKNKYGLDLYIKRMDSREPLAISMLALISLKI
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHEE
KQHEIIEISCNSDSSKAESAVLELCNFINYDISKENPTSKLDDIIEENTIAYDQIFTNIP
CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCC
IGILVIDKNSKITMANDYSLKIIGYSLKDILGKNIKDIIPSSELPDIIKNKCYHKGKTQY
EEEEEEECCCEEEEECCCEEEEEEECHHHHHCCCHHHHCCCCCCCHHHHHHHCCCCCCEE
MDNRILITNRSPIYFNDKILGAISVFQDISELVGIKELNEKFKKILEASHDLICFVDEDG
CCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCC
KIIYVNPSYKKHFSINSKDIIGKDVKESHINSLIMEVFNTKRPKENVIYNKDNINIISTI
EEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEC
EPIFIDNEFKGVISISKTVDELRDLTLKLTESEEKLMYYKNELTRHLPLSSSFKSIIGWN
CEEEECCCCCEEEEHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCC
SSLKDCLSIAEKASKSTSTVLVRGESGTGKEIIANAIHDNSPRKNRSFVRVNCAAIPENL
CCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHCCHHH
LESELFGFEKGAFTGAIKKKPGKFNIADGGTIFLDEIGDLPISMQVKLLRVLQEKEFESI
HHHHHHCCCCCCEECHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
GGIKTQRVDVRIIAATNRNLEDMIKNNTFREDLYYRLNVLNISLPPLRHRKQDINLLVEH
CCCEEEEEEEEEEEECCCCHHHHHHCCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHH
FINKINPKLNKNIVGINKEALSKLQQYDWPGNIRELENIVERAMNMCDKSIITVKDLPFY
HHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEE
ISNNSFDDSYNFTINEDNLKTLEEYEKEIITLAMKRYKSFNRAGKALGVTHRTVSLKCKK
EECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEE
YNISPEIYK
ECCCCCCCC
>Mature Secondary Structure
MYKNNIVVPINNGIHTRIAAMIVHKATEIKNKYGLDLYIKRMDSREPLAISMLALISLKI
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHEE
KQHEIIEISCNSDSSKAESAVLELCNFINYDISKENPTSKLDDIIEENTIAYDQIFTNIP
CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCC
IGILVIDKNSKITMANDYSLKIIGYSLKDILGKNIKDIIPSSELPDIIKNKCYHKGKTQY
EEEEEEECCCEEEEECCCEEEEEEECHHHHHCCCHHHHCCCCCCCHHHHHHHCCCCCCEE
MDNRILITNRSPIYFNDKILGAISVFQDISELVGIKELNEKFKKILEASHDLICFVDEDG
CCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCC
KIIYVNPSYKKHFSINSKDIIGKDVKESHINSLIMEVFNTKRPKENVIYNKDNINIISTI
EEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEC
EPIFIDNEFKGVISISKTVDELRDLTLKLTESEEKLMYYKNELTRHLPLSSSFKSIIGWN
CEEEECCCCCEEEEHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCC
SSLKDCLSIAEKASKSTSTVLVRGESGTGKEIIANAIHDNSPRKNRSFVRVNCAAIPENL
CCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHCCHHH
LESELFGFEKGAFTGAIKKKPGKFNIADGGTIFLDEIGDLPISMQVKLLRVLQEKEFESI
HHHHHHCCCCCCEECHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
GGIKTQRVDVRIIAATNRNLEDMIKNNTFREDLYYRLNVLNISLPPLRHRKQDINLLVEH
CCCEEEEEEEEEEEECCCCHHHHHHCCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHH
FINKINPKLNKNIVGINKEALSKLQQYDWPGNIRELENIVERAMNMCDKSIITVKDLPFY
HHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEE
ISNNSFDDSYNFTINEDNLKTLEEYEKEIITLAMKRYKSFNRAGKALGVTHRTVSLKCKK
EECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEE
YNISPEIYK
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]