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The map label for this gene is ydiC [H]

Identifier: 226950747

GI number: 226950747

Start: 3782145

End: 3782858

Strand: Direct

Name: ydiC [H]

Synonym: CLM_3757

Alternate gene names: 226950747

Gene position: 3782145-3782858 (Clockwise)

Preceding gene: 226950746

Following gene: 226950748

Centisome position: 91.02

GC content: 27.73

Gene sequence:

>714_bases
ATGAAAATACTAAGTATAGATTCTGCTACAGAATGTGCTAGTTGTTCTGTATTAGATGAGGATAAATTATATGGTGAAAT
AAATTTTAACTATAAAAAACAACACTCTACCATATTAATAAGTATGATAGATACTTTACTTAAAAGTATAGATTGTGACA
TATCCTCTATAGATGCCTTTGTTATATCTAAAGGACCTGGTTCCTTTACTGGATTAAGAATAGGTGCTGCTACTGTAAAA
GGATTAAGTCAGGGTACAAAAAAACCTTTTGTTTCTGTATCTTCCTTAGATAGTCTAGCTTTTAATTTAGCTTTCACAGA
GGGGATTATTTGTCCTATATTAGACGCTTTAAGAGGAAACGTTTATACATCCTTATACAAATTTGAAAACCATAAGTTGA
GAAGATTAACAGACTATAATGTAATATCTATAGAAAACTTAATAGATATATTAAAATCTAAAAATGAACCTATAACCTTC
ATTGGCGATGGAATTTTTAAATTTAAAGATACCATTTTATCTAATATGGATAATGTAAAACTTGCTCCTACTCATTTAAA
TTTAGCTCGCTCTTCATCTTTAGGTGAACTTGGATTACATTTATTAAAAGAAGGACATAAAGATGATATATATACTTTTT
CTCCTTTGTATATAAGAAAATCCCAAGCTGAAAGAGAATATGAAAAAAAAATAGGAATAAAAGATCATGAATAA

Upstream 100 bases:

>100_bases
ATATAAGAATAAATAAAATACCTGAAAAGGGAGAAAGCTATAGAAAAATAACAATAAATTACTATGGCAATAGATATGAT
TATATAAAGGAGCTAAAAAT

Downstream 100 bases:

>100_bases
AAAAGATATAATTGTATTACCCTTTTCTCTAGAACATATAGATGGAGTAATGGAAATAGATAATTTAAGCTTTTCTGTTC
CTTGGAGTAGGAATTCTTAT

Product: glycoprotease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKILSIDSATECASCSVLDEDKLYGEINFNYKKQHSTILISMIDTLLKSIDCDISSIDAFVISKGPGSFTGLRIGAATVK
GLSQGTKKPFVSVSSLDSLAFNLAFTEGIICPILDALRGNVYTSLYKFENHKLRRLTDYNVISIENLIDILKSKNEPITF
IGDGIFKFKDTILSNMDNVKLAPTHLNLARSSSLGELGLHLLKEGHKDDIYTFSPLYIRKSQAEREYEKKIGIKDHE

Sequences:

>Translated_237_residues
MKILSIDSATECASCSVLDEDKLYGEINFNYKKQHSTILISMIDTLLKSIDCDISSIDAFVISKGPGSFTGLRIGAATVK
GLSQGTKKPFVSVSSLDSLAFNLAFTEGIICPILDALRGNVYTSLYKFENHKLRRLTDYNVISIENLIDILKSKNEPITF
IGDGIFKFKDTILSNMDNVKLAPTHLNLARSSSLGELGLHLLKEGHKDDIYTFSPLYIRKSQAEREYEKKIGIKDHE
>Mature_237_residues
MKILSIDSATECASCSVLDEDKLYGEINFNYKKQHSTILISMIDTLLKSIDCDISSIDAFVISKGPGSFTGLRIGAATVK
GLSQGTKKPFVSVSSLDSLAFNLAFTEGIICPILDALRGNVYTSLYKFENHKLRRLTDYNVISIENLIDILKSKNEPITF
IGDGIFKFKDTILSNMDNVKLAPTHLNLARSSSLGELGLHLLKEGHKDDIYTFSPLYIRKSQAEREYEKKIGIKDHE

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=236, Percent_Identity=24.5762711864407, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26375; Mature: 26375

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILSIDSATECASCSVLDEDKLYGEINFNYKKQHSTILISMIDTLLKSIDCDISSIDAF
CEEEECCCCCCCCCCCEECCCCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCHHHCCEE
VISKGPGSFTGLRIGAATVKGLSQGTKKPFVSVSSLDSLAFNLAFTEGIICPILDALRGN
EEECCCCCCCEEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCC
VYTSLYKFENHKLRRLTDYNVISIENLIDILKSKNEPITFIGDGIFKFKDTILSNMDNVK
HHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCE
LAPTHLNLARSSSLGELGLHLLKEGHKDDIYTFSPLYIRKSQAEREYEKKIGIKDHE
ECCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKILSIDSATECASCSVLDEDKLYGEINFNYKKQHSTILISMIDTLLKSIDCDISSIDAF
CEEEECCCCCCCCCCCEECCCCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCHHHCCEE
VISKGPGSFTGLRIGAATVKGLSQGTKKPFVSVSSLDSLAFNLAFTEGIICPILDALRGN
EEECCCCCCCEEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCC
VYTSLYKFENHKLRRLTDYNVISIENLIDILKSKNEPITFIGDGIFKFKDTILSNMDNVK
HHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCE
LAPTHLNLARSSSLGELGLHLLKEGHKDDIYTFSPLYIRKSQAEREYEKKIGIKDHE
ECCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]