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The map label for this gene is ydiF [H]

Identifier: 226950732

GI number: 226950732

Start: 3760274

End: 3762196

Strand: Direct

Name: ydiF [H]

Synonym: CLM_3741

Alternate gene names: 226950732

Gene position: 3760274-3762196 (Clockwise)

Preceding gene: 226950725

Following gene: 226950735

Centisome position: 90.49

GC content: 26.21

Gene sequence:

>1923_bases
ATGGTTGTATTAAGTTGTAAAAACATTTCAAAAGCTTATGGTGTTGATTTGATTTTAGATAATTTAACATTTAACATAAA
TGAGAATGATAAAGTTGGTTTAATAGGTGCTAATGGTGCTGGTAAATCCACTTTATTTAAAATTCTTACTTCTTCTTTAG
AGCAGGATAGCGGAGATATTTTTATAGATAAATCTAAATCTTTAGGATACCTTGCTCAACATCTCTCCTTAGATTCTAAT
AATACTATTTATGAAGAAGTGTTAGATGTTTTTCATGATCTTATAAAAATGGAAGAAAAACTAAATAAATTAGAAAAATT
AATGAATGAGCCCTATGATAAGAATAATAAAGAATATCATGATAAAGTTATAAAAGATTATACTACCTATACAGATTTAT
ATATAAATAGAGGTGGTTATACTTATAAAGGTGAAATTCATAGAGTACTAAGGGGTTTAAGTTTTGAAGAAGAAGATTTT
AATAAACAAATAAATATATTAAGTGGCGGTCAAAAAACTAGAGTAGCCCTTTGTAAGCTTTTACTTCAAAGTCCAGATAT
ATTGCTTCTAGATGAGCCTACAAATCATTTAGACTTAACAGCTATAAATTGGTTAGAAGAATACTTAAAGGCCTATAAAG
GTACCGTACTGATTATATCTCATGATAGATATTTTTTAGATGAAATTACAAACCAAACCTTTGAACTTATAAGTGGTCAT
ATGAATTGTTATAATGGTAATTATTCTAAATTTATAGAACTTAGAAAAAAAGAGTATGAAGTAAAATTAAAAGCATATAA
TCTTCAACAATCTGAAATTAAAAGACAAGAGAAAATAATAGAAAAATATAGATCCTTTAATAGAGAAAAAAGCATAAAAG
CAGCTGAAAGTAGACAAAAATCTTTAGATAAAATTGAAAGAATAGACGCTCCAGATAAATTACCTAAACCTGTAAAAATA
AGTTTTGAAACCCAAATAAAAAGCGGAAATGATATACTTCACATAGAAAATTTAAGCAAAAGTTATGGGGATATGACTTT
GTTTGAAAATGTTGAAATGGATATAAAAAGAGGAGAAAAAATCGCTTTAATTGGAGATAATGGTAGAGGTAAAACCACGT
TATTTAAAATAATAATGGATGAAATTCAAAGCAACTCTGGAACAAAATATATAGGTAAGAATGTATTCATTGGCTATTAT
GATCAAGAACAATCTGACTTAAATGAGTGTAATACTGTATTAGATGAGATTTGGGATGAGTTTCCCGAAATGACTACTAC
AGAAGTTAGAAATGCTTTAGCCGCATTTTTATTTACTGGAGATGATGTATTTAAAGAAATATCTAAACTTAGTGGTGGAG
AAAAATGTAAAGTTAATTTATTAAAATTAATGCTTTCTAAATCTAATCTTCTTCTTTTAGATGAACCTACTAACCATTTA
GATATAATGTCTCGTGAAGCTTTAGAAGATGCCTTATTAAATTACGATGGTACAGTTTTAGTTATATCTCACGATAGATA
TTTTCTAAATAAGGTTATAGGAAAGATCTATGAACTAAATATAGATGGTATAAAAGAATATTTAGGTAATTATGATTATT
ATATTCACAAAAAAATTAATCCTAATAGATTTGACTATGAAGCTATAACCCTTGAAAATTCAAAAACTAAAACTCAAATA
CATCAAGAAAGAAAAAAGAAAAAAGAAGAAGAAAAAAAACTAAAACAAGAGAAGCTTAAAATAAAAAATTTAGAAAAAGA
AATAACAGACCTAGAAGAAGTGGTAAATTCCCTTCAAGAGCAACTTTGTCTTGAAGAAGTATATTCAGATTCTGTTAAAA
GTGAAAAAATAAATAAAGATATAATAAATAAGCAAAAATTAATAGAAGATCTTTATTCGGAGTGGGAAAACTTTATGGAA
TAA

Upstream 100 bases:

>100_bases
TATTATATTACTGAAGTAAAAAAATCAAATCTATATATATAATACTACAAAAAAAATGCAATACATAGTAAAATAGTACT
TGTTAAGGATGGTGAAATTA

Downstream 100 bases:

>100_bases
TATCTTTTAAAATAAATTTAATTTTAACACTGCAAAGATAAAAAATATACGTAATAAACATATGAATAAGTTTTAGTAGT
TTTTTATCTGGCATAATTTA

Product: putative drug resistance ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MVVLSCKNISKAYGVDLILDNLTFNINENDKVGLIGANGAGKSTLFKILTSSLEQDSGDIFIDKSKSLGYLAQHLSLDSN
NTIYEEVLDVFHDLIKMEEKLNKLEKLMNEPYDKNNKEYHDKVIKDYTTYTDLYINRGGYTYKGEIHRVLRGLSFEEEDF
NKQINILSGGQKTRVALCKLLLQSPDILLLDEPTNHLDLTAINWLEEYLKAYKGTVLIISHDRYFLDEITNQTFELISGH
MNCYNGNYSKFIELRKKEYEVKLKAYNLQQSEIKRQEKIIEKYRSFNREKSIKAAESRQKSLDKIERIDAPDKLPKPVKI
SFETQIKSGNDILHIENLSKSYGDMTLFENVEMDIKRGEKIALIGDNGRGKTTLFKIIMDEIQSNSGTKYIGKNVFIGYY
DQEQSDLNECNTVLDEIWDEFPEMTTTEVRNALAAFLFTGDDVFKEISKLSGGEKCKVNLLKLMLSKSNLLLLDEPTNHL
DIMSREALEDALLNYDGTVLVISHDRYFLNKVIGKIYELNIDGIKEYLGNYDYYIHKKINPNRFDYEAITLENSKTKTQI
HQERKKKKEEEKKLKQEKLKIKNLEKEITDLEEVVNSLQEQLCLEEVYSDSVKSEKINKDIINKQKLIEDLYSEWENFME

Sequences:

>Translated_640_residues
MVVLSCKNISKAYGVDLILDNLTFNINENDKVGLIGANGAGKSTLFKILTSSLEQDSGDIFIDKSKSLGYLAQHLSLDSN
NTIYEEVLDVFHDLIKMEEKLNKLEKLMNEPYDKNNKEYHDKVIKDYTTYTDLYINRGGYTYKGEIHRVLRGLSFEEEDF
NKQINILSGGQKTRVALCKLLLQSPDILLLDEPTNHLDLTAINWLEEYLKAYKGTVLIISHDRYFLDEITNQTFELISGH
MNCYNGNYSKFIELRKKEYEVKLKAYNLQQSEIKRQEKIIEKYRSFNREKSIKAAESRQKSLDKIERIDAPDKLPKPVKI
SFETQIKSGNDILHIENLSKSYGDMTLFENVEMDIKRGEKIALIGDNGRGKTTLFKIIMDEIQSNSGTKYIGKNVFIGYY
DQEQSDLNECNTVLDEIWDEFPEMTTTEVRNALAAFLFTGDDVFKEISKLSGGEKCKVNLLKLMLSKSNLLLLDEPTNHL
DIMSREALEDALLNYDGTVLVISHDRYFLNKVIGKIYELNIDGIKEYLGNYDYYIHKKINPNRFDYEAITLENSKTKTQI
HQERKKKKEEEKKLKQEKLKIKNLEKEITDLEEVVNSLQEQLCLEEVYSDSVKSEKINKDIINKQKLIEDLYSEWENFME
>Mature_640_residues
MVVLSCKNISKAYGVDLILDNLTFNINENDKVGLIGANGAGKSTLFKILTSSLEQDSGDIFIDKSKSLGYLAQHLSLDSN
NTIYEEVLDVFHDLIKMEEKLNKLEKLMNEPYDKNNKEYHDKVIKDYTTYTDLYINRGGYTYKGEIHRVLRGLSFEEEDF
NKQINILSGGQKTRVALCKLLLQSPDILLLDEPTNHLDLTAINWLEEYLKAYKGTVLIISHDRYFLDEITNQTFELISGH
MNCYNGNYSKFIELRKKEYEVKLKAYNLQQSEIKRQEKIIEKYRSFNREKSIKAAESRQKSLDKIERIDAPDKLPKPVKI
SFETQIKSGNDILHIENLSKSYGDMTLFENVEMDIKRGEKIALIGDNGRGKTTLFKIIMDEIQSNSGTKYIGKNVFIGYY
DQEQSDLNECNTVLDEIWDEFPEMTTTEVRNALAAFLFTGDDVFKEISKLSGGEKCKVNLLKLMLSKSNLLLLDEPTNHL
DIMSREALEDALLNYDGTVLVISHDRYFLNKVIGKIYELNIDGIKEYLGNYDYYIHKKINPNRFDYEAITLENSKTKTQI
HQERKKKKEEEKKLKQEKLKIKNLEKEITDLEEVVNSLQEQLCLEEVYSDSVKSEKINKDIINKQKLIEDLYSEWENFME

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=27.7985074626866, Blast_Score=226, Evalue=6e-59,
Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=28.411214953271, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=28.411214953271, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=26.8876611418048, Blast_Score=187, Evalue=3e-47,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=26.8876611418048, Blast_Score=187, Evalue=3e-47,
Organism=Homo sapiens, GI31657092, Length=190, Percent_Identity=28.4210526315789, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI1789751, Length=620, Percent_Identity=32.0967741935484, Blast_Score=318, Evalue=9e-88,
Organism=Escherichia coli, GI2367384, Length=549, Percent_Identity=33.5154826958106, Blast_Score=294, Evalue=1e-80,
Organism=Escherichia coli, GI1787041, Length=545, Percent_Identity=32.8440366972477, Blast_Score=278, Evalue=6e-76,
Organism=Escherichia coli, GI1787182, Length=653, Percent_Identity=29.0964777947933, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=28.8770053475936, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789593, Length=262, Percent_Identity=22.1374045801527, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=27.7056277056277, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081709, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788225, Length=265, Percent_Identity=23.7735849056604, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788761, Length=176, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=527, Percent_Identity=30.1707779886148, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17559834, Length=539, Percent_Identity=29.1280148423006, Blast_Score=218, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=28.4916201117318, Blast_Score=218, Evalue=9e-57,
Organism=Saccharomyces cerevisiae, GI6321121, Length=536, Percent_Identity=30.5970149253731, Blast_Score=236, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6320874, Length=520, Percent_Identity=30.9615384615385, Blast_Score=211, Evalue=4e-55,
Organism=Saccharomyces cerevisiae, GI6324314, Length=395, Percent_Identity=25.8227848101266, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=399, Percent_Identity=26.3157894736842, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6323278, Length=398, Percent_Identity=24.6231155778894, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24642252, Length=533, Percent_Identity=29.6435272045028, Blast_Score=236, Evalue=5e-62,
Organism=Drosophila melanogaster, GI18859989, Length=533, Percent_Identity=29.6435272045028, Blast_Score=236, Evalue=5e-62,
Organism=Drosophila melanogaster, GI24666836, Length=544, Percent_Identity=27.9411764705882, Blast_Score=232, Evalue=5e-61,
Organism=Drosophila melanogaster, GI24641342, Length=543, Percent_Identity=28.1767955801105, Blast_Score=221, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74287; Mature: 74287

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVLSCKNISKAYGVDLILDNLTFNINENDKVGLIGANGAGKSTLFKILTSSLEQDSGDI
CEEEEECCCCHHHCCEEEEECEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCE
FIDKSKSLGYLAQHLSLDSNNTIYEEVLDVFHDLIKMEEKLNKLEKLMNEPYDKNNKEYH
EEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DKVIKDYTTYTDLYINRGGYTYKGEIHRVLRGLSFEEEDFNKQINILSGGQKTRVALCKL
HHHHHHHHHHEEEEEECCCEEEHHHHHHHHHCCCCCCHHHCCEEEEECCCCHHHHHHHHH
LLQSPDILLLDEPTNHLDLTAINWLEEYLKAYKGTVLIISHDRYFLDEITNQTFELISGH
HHCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCC
MNCYNGNYSKFIELRKKEYEVKLKAYNLQQSEIKRQEKIIEKYRSFNREKSIKAAESRQK
CCCCCCCHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SLDKIERIDAPDKLPKPVKISFETQIKSGNDILHIENLSKSYGDMTLFENVEMDIKRGEK
HHHHHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCHHHCCEEEHHCCCHHHCCCCE
IALIGDNGRGKTTLFKIIMDEIQSNSGTKYIGKNVFIGYYDQEQSDLNECNTVLDEIWDE
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHH
FPEMTTTEVRNALAAFLFTGDDVFKEISKLSGGEKCKVNLLKLMLSKSNLLLLDEPTNHL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHH
DIMSREALEDALLNYDGTVLVISHDRYFLNKVIGKIYELNIDGIKEYLGNYDYYIHKKIN
HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC
PNRFDYEAITLENSKTKTQIHQERKKKKEEEKKLKQEKLKIKNLEKEITDLEEVVNSLQE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLCLEEVYSDSVKSEKINKDIINKQKLIEDLYSEWENFME
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVVLSCKNISKAYGVDLILDNLTFNINENDKVGLIGANGAGKSTLFKILTSSLEQDSGDI
CEEEEECCCCHHHCCEEEEECEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCE
FIDKSKSLGYLAQHLSLDSNNTIYEEVLDVFHDLIKMEEKLNKLEKLMNEPYDKNNKEYH
EEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DKVIKDYTTYTDLYINRGGYTYKGEIHRVLRGLSFEEEDFNKQINILSGGQKTRVALCKL
HHHHHHHHHHEEEEEECCCEEEHHHHHHHHHCCCCCCHHHCCEEEEECCCCHHHHHHHHH
LLQSPDILLLDEPTNHLDLTAINWLEEYLKAYKGTVLIISHDRYFLDEITNQTFELISGH
HHCCCCEEEEECCCCCEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCC
MNCYNGNYSKFIELRKKEYEVKLKAYNLQQSEIKRQEKIIEKYRSFNREKSIKAAESRQK
CCCCCCCHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SLDKIERIDAPDKLPKPVKISFETQIKSGNDILHIENLSKSYGDMTLFENVEMDIKRGEK
HHHHHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCHHHCCEEEHHCCCHHHCCCCE
IALIGDNGRGKTTLFKIIMDEIQSNSGTKYIGKNVFIGYYDQEQSDLNECNTVLDEIWDE
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHH
FPEMTTTEVRNALAAFLFTGDDVFKEISKLSGGEKCKVNLLKLMLSKSNLLLLDEPTNHL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHH
DIMSREALEDALLNYDGTVLVISHDRYFLNKVIGKIYELNIDGIKEYLGNYDYYIHKKIN
HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC
PNRFDYEAITLENSKTKTQIHQERKKKKEEEKKLKQEKLKIKNLEKEITDLEEVVNSLQE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLCLEEVYSDSVKSEKINKDIINKQKLIEDLYSEWENFME
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]