| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is mrdA [H]
Identifier: 226950423
GI number: 226950423
Start: 3428490
End: 3431264
Strand: Reverse
Name: mrdA [H]
Synonym: CLM_3395
Alternate gene names: 226950423
Gene position: 3431264-3428490 (Counterclockwise)
Preceding gene: 226950424
Following gene: 226950422
Centisome position: 82.58
GC content: 31.32
Gene sequence:
>2775_bases ATGAAGATAAACAAAGATAAAAAATTTACTAGATTTGGTGGTCTTATGTTGGTAATGGTATTTATAATTACCGCAATTAT ATCTAGACTTGTTTATTTGCAACTTATGAATTCACAGGAGTACAAAGAAAAAGCAAATAATAGATCCATAAGAGAAATTC CAGATCCTGCTCCAAGAGGGAATATAATAGATAGAAATGGAGTAGTATTAGCCACTAATAAGCAAAATTACATGCTTATA TATAATGAAACAGCAGAAAATAAAGAAAGTTTTTTTTCTACTATGGAAAAAGTATTTAGCATATTAGATCAATATAAAGA AAAACAAACGGATGATCTTGAGCTTAAAATTAATCCTTATAGATTTGAATTCAAAGCTAGTACAGCTGAGGCAAAAAGAG CAGCAGAGTTAAGATTTAAAAAAGATAGAGGATTAGATGATGTAGTTACAAAAAAATTATTTTCAGGTAAAAACAAAAAA GAAAAAGAAGAATTAACAAAAGAAGATGAAGCTAAAATAGATGAGGAGTTATTAAAAATAACTCCAGAGGAAACCTTTAA ATATTTATTAGAACAATATAAAATAGATACAAAGAAATATTCTCTAGAACAGCAAAGAAGATTTATGATAGTAAAAGATG CAGCAAAAATGCAGAGCTTTTCAGGATATAAATCTGTTGATGTGGCAAGTAATATAAAGAAAGAAACAGCTTTTATATTT CTTCAGAAATTAAATGATTTACCAGGTATAGATGTAAGCACTCAACCCATAAGAGTTTATCCTTATAAGGAAGTAGGATC AGCAGTACTAGGCTATATATCTAAAATAAGTGGTGATAATGAGAAATATAAAGAAAAGGGATATGACCCAAGTTCTGATT ATATAGGTATAGATGGAATAGAGGGTGTTTTTGAAGAAAGACTTAAGGGATCTAAAGGTGGAAGAATTGTTAAACTTAAT AAAACAGGAAGGGTTATAGAAGAATTAGGAAGAAGAGAACCTTATCCAGGTCAAAATATACAACTTACTATAGATACGAA TATACAGAAGGCTGCAGAAGAGTCGCTGGATTCTGTAATGAAAGATCTTCAACAAAGAGGAGTACAAGGCGATGTTAATA CATCTAATGCTACAAGAGGTGCTGCAGTAGCATTAGATGTAAATACAGGAGAAATTTTAGCTTTGGCAAGTAGGCCAGGC TTTGATCCTAACTTATTTGCAACTCCAGGAGGATTAACCCCAGAACTATATAAACAATATTTTAACCCGGATTTAACTGA GTTTGGAAAACAATATATACTTAATAAAGGATTAATGGGCTATTATCCGGGAAATACTTTAGACGAGGTTTTAGAAAAGC TATTTCCTTTAGATAAAAGTATAAAAAATAATAAAACTATGAGGCAAGATTTATATGATATATATCCAAAGCCTTTTTAT AATTATGCTACTATGTCTGTAGTACCTCCAGGATCTACATTTAAAGCTATGACAGCTATTGCAGGATTAGAATCAGGGGT TATAACTCCTGGATATTCTATAAGCGATACGGGCGTTTTTGATGACGGAAAGAAGTTTGTAAAGAAATTCGCAGTAGGTG GCTATGGTTCCGTTGATTTATATAGAGGATTAGAGGTTTCTAGTAACCCTTATTTTATGACAGTAGGTAAATTATTAAGA GAGAGTTTTGGTGATGATATACTTGCAAAATACGCTTGGAAATTTGGGTTAGGTGTTCCACCAAATTCAGATGAAAAAGC TTCTACAGGAATAGAAATTCCTGAAAAGTTTGGACAAGTATTTAATACTTATACATTATCTAATGTTTATGCAACTCAAT ACTTGTGGCAAACTATGTCTACTTTAAAATCAGGAACAGATGCTAGGGGAAATAAATTTCCATCTATAAATTTATATGAT AGCGAAAAAGATTTAGACAAGGTTAAGGAATTAAAGAAACAAATTAAAAATTCTATACAGGACTCTATAAAAGAAGGAAC TAAAAAGTTTGATTCTAATAATTATATAAAAATGCTTACAGAGTTAGTTAATCAAGATCCTATCTATAAAGGTAAAAATG TAAGTAAAGATCAAATAAAAAGAATTGTAGATGTTATATACTATGTAACAATATCAGATGCTCACTTCCAGTTAGGTGTA GGTGCTAATATGTACAATGCTGCTATAGGACAAGGTATAAGTAACTTTACTCCATTACAATTGGCTAATTTTGTTAGTAC TATAGCTAATGGAGGAGATAGATATAAATTGCATTTGGTGAAAGAAATAAAAGATGCAGATGGTAATGTAGTAGAAACAG TTAAACCAGAGATAGTTGAAAAGACTAATGTAAGCAAAGAGAATTTAGCTGCTGTAAGGCAAGGAATGGCACGAGTTAAT GAGGGAACAGATGGTACTGCAGCAGCAGTGTTTAAGGATTTCCCTATACAAACAGCAGGTAAAACAGGATCTTCTACTTT TAGTAATAGTCAAGATTATTATGGAAGAACATCTTATGGTGTTTATATAGGATTTGCTCCAGTTGATAATCCAAAAATAG CAGTATGTGTTATTGTATTTGATGGTGGACATGGAGGATCTGTTGCACCTGTAGCAAAGGCTATGTATGAAGCCTATTTT AAGAAGGAACTTAATAAAGACAAACCAGATGCAGCTAAAGCATCAAATTCAGGGCAAAAGGAAAATACTAAGAATTCAGA TGCTAGCGGAGATGATGCAAAGGACATAGAAAATAAAAATACAAATAACAGATAA
Upstream 100 bases:
>100_bases GGGGTAATAACAATTATAGTTTATAAATTAGTGTATAATTTATGTAGAAAAAAATATATGGATAAAAAGTGGGAATTCTA AAGGAATGGTGATTTAGTCA
Downstream 100 bases:
>100_bases ATAAATATAAACTATATCCACACTATAAATTATTTTATATAATAGATAGTGTGGATATTTTAAAATGGAAAATATTAAAT AAATAAAAGTATAATAAACA
Product: penicillin-binding protein
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 924; Mature: 924
Protein sequence:
>924_residues MKINKDKKFTRFGGLMLVMVFIITAIISRLVYLQLMNSQEYKEKANNRSIREIPDPAPRGNIIDRNGVVLATNKQNYMLI YNETAENKESFFSTMEKVFSILDQYKEKQTDDLELKINPYRFEFKASTAEAKRAAELRFKKDRGLDDVVTKKLFSGKNKK EKEELTKEDEAKIDEELLKITPEETFKYLLEQYKIDTKKYSLEQQRRFMIVKDAAKMQSFSGYKSVDVASNIKKETAFIF LQKLNDLPGIDVSTQPIRVYPYKEVGSAVLGYISKISGDNEKYKEKGYDPSSDYIGIDGIEGVFEERLKGSKGGRIVKLN KTGRVIEELGRREPYPGQNIQLTIDTNIQKAAEESLDSVMKDLQQRGVQGDVNTSNATRGAAVALDVNTGEILALASRPG FDPNLFATPGGLTPELYKQYFNPDLTEFGKQYILNKGLMGYYPGNTLDEVLEKLFPLDKSIKNNKTMRQDLYDIYPKPFY NYATMSVVPPGSTFKAMTAIAGLESGVITPGYSISDTGVFDDGKKFVKKFAVGGYGSVDLYRGLEVSSNPYFMTVGKLLR ESFGDDILAKYAWKFGLGVPPNSDEKASTGIEIPEKFGQVFNTYTLSNVYATQYLWQTMSTLKSGTDARGNKFPSINLYD SEKDLDKVKELKKQIKNSIQDSIKEGTKKFDSNNYIKMLTELVNQDPIYKGKNVSKDQIKRIVDVIYYVTISDAHFQLGV GANMYNAAIGQGISNFTPLQLANFVSTIANGGDRYKLHLVKEIKDADGNVVETVKPEIVEKTNVSKENLAAVRQGMARVN EGTDGTAAAVFKDFPIQTAGKTGSSTFSNSQDYYGRTSYGVYIGFAPVDNPKIAVCVIVFDGGHGGSVAPVAKAMYEAYF KKELNKDKPDAAKASNSGQKENTKNSDASGDDAKDIENKNTNNR
Sequences:
>Translated_924_residues MKINKDKKFTRFGGLMLVMVFIITAIISRLVYLQLMNSQEYKEKANNRSIREIPDPAPRGNIIDRNGVVLATNKQNYMLI YNETAENKESFFSTMEKVFSILDQYKEKQTDDLELKINPYRFEFKASTAEAKRAAELRFKKDRGLDDVVTKKLFSGKNKK EKEELTKEDEAKIDEELLKITPEETFKYLLEQYKIDTKKYSLEQQRRFMIVKDAAKMQSFSGYKSVDVASNIKKETAFIF LQKLNDLPGIDVSTQPIRVYPYKEVGSAVLGYISKISGDNEKYKEKGYDPSSDYIGIDGIEGVFEERLKGSKGGRIVKLN KTGRVIEELGRREPYPGQNIQLTIDTNIQKAAEESLDSVMKDLQQRGVQGDVNTSNATRGAAVALDVNTGEILALASRPG FDPNLFATPGGLTPELYKQYFNPDLTEFGKQYILNKGLMGYYPGNTLDEVLEKLFPLDKSIKNNKTMRQDLYDIYPKPFY NYATMSVVPPGSTFKAMTAIAGLESGVITPGYSISDTGVFDDGKKFVKKFAVGGYGSVDLYRGLEVSSNPYFMTVGKLLR ESFGDDILAKYAWKFGLGVPPNSDEKASTGIEIPEKFGQVFNTYTLSNVYATQYLWQTMSTLKSGTDARGNKFPSINLYD SEKDLDKVKELKKQIKNSIQDSIKEGTKKFDSNNYIKMLTELVNQDPIYKGKNVSKDQIKRIVDVIYYVTISDAHFQLGV GANMYNAAIGQGISNFTPLQLANFVSTIANGGDRYKLHLVKEIKDADGNVVETVKPEIVEKTNVSKENLAAVRQGMARVN EGTDGTAAAVFKDFPIQTAGKTGSSTFSNSQDYYGRTSYGVYIGFAPVDNPKIAVCVIVFDGGHGGSVAPVAKAMYEAYF KKELNKDKPDAAKASNSGQKENTKNSDASGDDAKDIENKNTNNR >Mature_924_residues MKINKDKKFTRFGGLMLVMVFIITAIISRLVYLQLMNSQEYKEKANNRSIREIPDPAPRGNIIDRNGVVLATNKQNYMLI YNETAENKESFFSTMEKVFSILDQYKEKQTDDLELKINPYRFEFKASTAEAKRAAELRFKKDRGLDDVVTKKLFSGKNKK EKEELTKEDEAKIDEELLKITPEETFKYLLEQYKIDTKKYSLEQQRRFMIVKDAAKMQSFSGYKSVDVASNIKKETAFIF LQKLNDLPGIDVSTQPIRVYPYKEVGSAVLGYISKISGDNEKYKEKGYDPSSDYIGIDGIEGVFEERLKGSKGGRIVKLN KTGRVIEELGRREPYPGQNIQLTIDTNIQKAAEESLDSVMKDLQQRGVQGDVNTSNATRGAAVALDVNTGEILALASRPG FDPNLFATPGGLTPELYKQYFNPDLTEFGKQYILNKGLMGYYPGNTLDEVLEKLFPLDKSIKNNKTMRQDLYDIYPKPFY NYATMSVVPPGSTFKAMTAIAGLESGVITPGYSISDTGVFDDGKKFVKKFAVGGYGSVDLYRGLEVSSNPYFMTVGKLLR ESFGDDILAKYAWKFGLGVPPNSDEKASTGIEIPEKFGQVFNTYTLSNVYATQYLWQTMSTLKSGTDARGNKFPSINLYD SEKDLDKVKELKKQIKNSIQDSIKEGTKKFDSNNYIKMLTELVNQDPIYKGKNVSKDQIKRIVDVIYYVTISDAHFQLGV GANMYNAAIGQGISNFTPLQLANFVSTIANGGDRYKLHLVKEIKDADGNVVETVKPEIVEKTNVSKENLAAVRQGMARVN EGTDGTAAAVFKDFPIQTAGKTGSSTFSNSQDYYGRTSYGVYIGFAPVDNPKIAVCVIVFDGGHGGSVAPVAKAMYEAYF KKELNKDKPDAAKASNSGQKENTKNSDASGDDAKDIENKNTNNR
Specific function: Cell wall formation; PBP-2 is responsible for the determination of the rod shape of the cell. Its synthesize cross- linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=392, Percent_Identity=27.0408163265306, Blast_Score=109, Evalue=1e-24, Organism=Escherichia coli, GI1786272, Length=171, Percent_Identity=32.7485380116959, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR017790 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 103152; Mature: 103152
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINKDKKFTRFGGLMLVMVFIITAIISRLVYLQLMNSQEYKEKANNRSIREIPDPAPRG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCC NIIDRNGVVLATNKQNYMLIYNETAENKESFFSTMEKVFSILDQYKEKQTDDLELKINPY CEECCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCE RFEFKASTAEAKRAAELRFKKDRGLDDVVTKKLFSGKNKKEKEELTKEDEAKIDEELLKI EEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHC TPEETFKYLLEQYKIDTKKYSLEQQRRFMIVKDAAKMQSFSGYKSVDVASNIKKETAFIF CHHHHHHHHHHHHHCCHHHHHHHHHHCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHH LQKLNDLPGIDVSTQPIRVYPYKEVGSAVLGYISKISGDNEKYKEKGYDPSSDYIGIDGI HHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEECCCCH EGVFEERLKGSKGGRIVKLNKTGRVIEELGRREPYPGQNIQLTIDTNIQKAAEESLDSVM HHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH KDLQQRGVQGDVNTSNATRGAAVALDVNTGEILALASRPGFDPNLFATPGGLTPELYKQY HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHH FNPDLTEFGKQYILNKGLMGYYPGNTLDEVLEKLFPLDKSIKNNKTMRQDLYDIYPKPFY CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCC NYATMSVVPPGSTFKAMTAIAGLESGVITPGYSISDTGVFDDGKKFVKKFAVGGYGSVDL CCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH YRGLEVSSNPYFMTVGKLLRESFGDDILAKYAWKFGLGVPPNSDEKASTGIEIPEKFGQV HCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH FNTYTLSNVYATQYLWQTMSTLKSGTDARGNKFPSINLYDSEKDLDKVKELKKQIKNSIQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH DSIKEGTKKFDSNNYIKMLTELVNQDPIYKGKNVSKDQIKRIVDVIYYVTISDAHFQLGV HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEC GANMYNAAIGQGISNFTPLQLANFVSTIANGGDRYKLHLVKEIKDADGNVVETVKPEIVE CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCEEECCCHHHHH KTNVSKENLAAVRQGMARVNEGTDGTAAAVFKDFPIQTAGKTGSSTFSNSQDYYGRTSYG HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE VYIGFAPVDNPKIAVCVIVFDGGHGGSVAPVAKAMYEAYFKKELNKDKPDAAKASNSGQK EEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC ENTKNSDASGDDAKDIENKNTNNR CCCCCCCCCCCCHHHHCCCCCCCC >Mature Secondary Structure MKINKDKKFTRFGGLMLVMVFIITAIISRLVYLQLMNSQEYKEKANNRSIREIPDPAPRG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCC NIIDRNGVVLATNKQNYMLIYNETAENKESFFSTMEKVFSILDQYKEKQTDDLELKINPY CEECCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCE RFEFKASTAEAKRAAELRFKKDRGLDDVVTKKLFSGKNKKEKEELTKEDEAKIDEELLKI EEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHC TPEETFKYLLEQYKIDTKKYSLEQQRRFMIVKDAAKMQSFSGYKSVDVASNIKKETAFIF CHHHHHHHHHHHHHCCHHHHHHHHHHCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHH LQKLNDLPGIDVSTQPIRVYPYKEVGSAVLGYISKISGDNEKYKEKGYDPSSDYIGIDGI HHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEECCCCH EGVFEERLKGSKGGRIVKLNKTGRVIEELGRREPYPGQNIQLTIDTNIQKAAEESLDSVM HHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH KDLQQRGVQGDVNTSNATRGAAVALDVNTGEILALASRPGFDPNLFATPGGLTPELYKQY HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEECCCCCCHHHHHHH FNPDLTEFGKQYILNKGLMGYYPGNTLDEVLEKLFPLDKSIKNNKTMRQDLYDIYPKPFY CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCC NYATMSVVPPGSTFKAMTAIAGLESGVITPGYSISDTGVFDDGKKFVKKFAVGGYGSVDL CCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH YRGLEVSSNPYFMTVGKLLRESFGDDILAKYAWKFGLGVPPNSDEKASTGIEIPEKFGQV HCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH FNTYTLSNVYATQYLWQTMSTLKSGTDARGNKFPSINLYDSEKDLDKVKELKKQIKNSIQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH DSIKEGTKKFDSNNYIKMLTELVNQDPIYKGKNVSKDQIKRIVDVIYYVTISDAHFQLGV HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEC GANMYNAAIGQGISNFTPLQLANFVSTIANGGDRYKLHLVKEIKDADGNVVETVKPEIVE CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCEEECCCHHHHH KTNVSKENLAAVRQGMARVNEGTDGTAAAVFKDFPIQTAGKTGSSTFSNSQDYYGRTSYG HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE VYIGFAPVDNPKIAVCVIVFDGGHGGSVAPVAKAMYEAYFKKELNKDKPDAAKASNSGQK EEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC ENTKNSDASGDDAKDIENKNTNNR CCCCCCCCCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]