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The map label for this gene is ybeY [C]

Identifier: 226950374

GI number: 226950374

Start: 3375643

End: 3376143

Strand: Reverse

Name: ybeY [C]

Synonym: CLM_3343

Alternate gene names: 226950374

Gene position: 3376143-3375643 (Counterclockwise)

Preceding gene: 226950375

Following gene: 226950373

Centisome position: 81.25

GC content: 25.95

Gene sequence:

>501_bases
ATGATATATATAGATAATAGACAGAATAAAATAAAAGTAAATGAAGAGCTTGAAAATAAAATAAAAGAAATAATAGACTA
TGCATTAAAAGAGGAAAAGGTAAATATAGATTATGAAATAAGTGTGGTTTTTATAGATAACAATAGTATAAAAGAAATAA
ATAAAGACTATAGAAATATAGATAAAGCTACAGATGTATTATCCTTTCCAATGTTAGATTATGAGGAAGGAGAAGTTTTT
AAAGATATATATTTAAACTATGAATTTGATGAAAGTGATCTAGATGAGGGAAATTTAGTTTTAGGAGATATAGCCCTTTC
TTTAGAGAAAGCAGAAGAGCAAAGTAAAGAATTTGGTCACAGTTTTTTAAGAGAGACTTGCTATTTAACAATACATTCAG
TACTGCATCTCTTAGGATATGATCATATGGAAGAAGATGAGAAAGTTATAATGAGACAGAGAGAAGAAGAAATATTAAAA
AGCTTTAATTTACACAGGTAA

Upstream 100 bases:

>100_bases
TAGGACTAATAAGAGATGCTTTTTTGAAGGTCCTTATAAGTATATATCACCAAAGAATAGAATATCCAGAGGATAAATGG
ATAAGAGATAGGAGGATAAA

Downstream 100 bases:

>100_bases
AAATTCATTTATTTTAACCTGTAAAGGATGATGATTAGCCATGAAGGTAAATAAACTTTTGGATAGTTTTAATTATGCTA
TAGATGGAATAATACATGCA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR

Sequences:

>Translated_166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR
>Mature_166_residues
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVF
KDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILK
SFNLHR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19763; Mature: 19763

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNI
CEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHH
DKATDVLSFPMLDYEEGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGH
HHHHHHHHCCCCCCCCCCEEEHHEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
SFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNLHR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIYIDNRQNKIKVNEELENKIKEIIDYALKEEKVNIDYEISVVFIDNNSIKEINKDYRNI
CEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHH
DKATDVLSFPMLDYEEGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGH
HHHHHHHHCCCCCCCCCCEEEHHEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
SFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNLHR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA