Click here to switch to the map view.

The map label for this gene is sufB [C]

Identifier: 226950249

GI number: 226950249

Start: 3228258

End: 3229178

Strand: Reverse

Name: sufB [C]

Synonym: CLM_3204

Alternate gene names: 226950249

Gene position: 3229178-3228258 (Counterclockwise)

Preceding gene: 226950250

Following gene: 226950246

Centisome position: 77.71

GC content: 32.68

Gene sequence:

>921_bases
ATGATGAATGCAATACATAAAAATTTATTAAAAGAAGTAATAGGATTTCACGAGATTCCCATAGGGGCTTATAATATTAG
GACAAATGGAAAATCAGTTGGAAGAAATACAACTGAGAATATAGATATTGTTATCAAAACAGATAAACCAGGAATTGATA
TCATTATTAAACCTAATACAAAGAATGAGAGTGTGCATATACCTGTTTTATTAAGTGAGAGTGGTTTTAAAGAAATGATA
TATAATGATTTTTATGTTGGAGAAAATTCCGATGTAACTATTATTGCCGGTTGCGGAATCCATAATGGTGGGAGTGGGGC
ATCTGAACATAGCGGTATCCATAGTTTTTTTATTGGTAAAAATGCGAAAGTAAAATATGTAGAAAAGCACTATGGAACTG
GCGATGGTAATGGAGAACGTATTATGAATCCTACAACAATTATAAAAATTGATAATGGTGGTTATATGAAAATGGATACT
GTACAGATTGAGGGAGTTAATTCCACAAAGCGTGTAACAAAGGCCACTTTGAAAGATAGTTCTACATTGGTTATTCAAGA
GAAAATAATGACTCATGGAAAGCAAACTGCTGAGACAGAATTTGAGGTGAATCTAGATGGTGTGAACTCTAGTACCAATG
TAATATCAAGATCTGTAGCAAAAGATAATTCACATCAATTATTTTTATCCAAAATTAATGGAAATAATAAATGCGCAGGA
CATACAGAATGTGATGCAATTATCATGGATAATGCAAGTGTAAGAGCAATTCCTGAAATTGCAGCCAATTGTATTGATGC
AAGTTTAATTCATGAAGCAGCTATTGGCAAGATTTGTGGGGAACAGCTTATTAAGCTAATGACCTTAGGGCTTACTGAAG
CAGAAGCAGAAGAACAGATCATTAATGGATTTTTAAAGTAA

Upstream 100 bases:

>100_bases
ATTGATGGTGGTGAAGTAAAACAAGTTGGCAAGAAAGATGAAATACTTCAAGAACTATTAAATAATTCTAAAGGTTGTAA
ATTTTACAAAGGAGAATGAG

Downstream 100 bases:

>100_bases
TTATAGGATATAATGAGTGAGATTATGTTTTTTACAGAATATTAATGCATGAAAAAAGATATTGACTAAAAATGAATAAA
AGGTGACATAACATAAATGT

Product: SufBD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MMNAIHKNLLKEVIGFHEIPIGAYNIRTNGKSVGRNTTENIDIVIKTDKPGIDIIIKPNTKNESVHIPVLLSESGFKEMI
YNDFYVGENSDVTIIAGCGIHNGGSGASEHSGIHSFFIGKNAKVKYVEKHYGTGDGNGERIMNPTTIIKIDNGGYMKMDT
VQIEGVNSTKRVTKATLKDSSTLVIQEKIMTHGKQTAETEFEVNLDGVNSSTNVISRSVAKDNSHQLFLSKINGNNKCAG
HTECDAIIMDNASVRAIPEIAANCIDASLIHEAAIGKICGEQLIKLMTLGLTEAEAEEQIINGFLK

Sequences:

>Translated_306_residues
MMNAIHKNLLKEVIGFHEIPIGAYNIRTNGKSVGRNTTENIDIVIKTDKPGIDIIIKPNTKNESVHIPVLLSESGFKEMI
YNDFYVGENSDVTIIAGCGIHNGGSGASEHSGIHSFFIGKNAKVKYVEKHYGTGDGNGERIMNPTTIIKIDNGGYMKMDT
VQIEGVNSTKRVTKATLKDSSTLVIQEKIMTHGKQTAETEFEVNLDGVNSSTNVISRSVAKDNSHQLFLSKINGNNKCAG
HTECDAIIMDNASVRAIPEIAANCIDASLIHEAAIGKICGEQLIKLMTLGLTEAEAEEQIINGFLK
>Mature_306_residues
MMNAIHKNLLKEVIGFHEIPIGAYNIRTNGKSVGRNTTENIDIVIKTDKPGIDIIIKPNTKNESVHIPVLLSESGFKEMI
YNDFYVGENSDVTIIAGCGIHNGGSGASEHSGIHSFFIGKNAKVKYVEKHYGTGDGNGERIMNPTTIIKIDNGGYMKMDT
VQIEGVNSTKRVTKATLKDSSTLVIQEKIMTHGKQTAETEFEVNLDGVNSSTNVISRSVAKDNSHQLFLSKINGNNKCAG
HTECDAIIMDNASVRAIPEIAANCIDASLIHEAAIGKICGEQLIKLMTLGLTEAEAEEQIINGFLK

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=226, Percent_Identity=27.8761061946903, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 33185; Mature: 33185

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNAIHKNLLKEVIGFHEIPIGAYNIRTNGKSVGRNTTENIDIVIKTDKPGIDIIIKPNT
CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC
KNESVHIPVLLSESGFKEMIYNDFYVGENSDVTIIAGCGIHNGGSGASEHSGIHSFFIGK
CCCEEEEEEEECCCCCHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECC
NAKVKYVEKHYGTGDGNGERIMNPTTIIKIDNGGYMKMDTVQIEGVNSTKRVTKATLKDS
CCEEEEEEECCCCCCCCCCEEECCEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHCCC
STLVIQEKIMTHGKQTAETEFEVNLDGVNSSTNVISRSVAKDNSHQLFLSKINGNNKCAG
CEEEEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCC
HTECDAIIMDNASVRAIPEIAANCIDASLIHEAAIGKICGEQLIKLMTLGLTEAEAEEQI
CCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
INGFLK
HHHHCC
>Mature Secondary Structure
MMNAIHKNLLKEVIGFHEIPIGAYNIRTNGKSVGRNTTENIDIVIKTDKPGIDIIIKPNT
CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC
KNESVHIPVLLSESGFKEMIYNDFYVGENSDVTIIAGCGIHNGGSGASEHSGIHSFFIGK
CCCEEEEEEEECCCCCHHHHHCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECC
NAKVKYVEKHYGTGDGNGERIMNPTTIIKIDNGGYMKMDTVQIEGVNSTKRVTKATLKDS
CCEEEEEEECCCCCCCCCCEEECCEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHCCC
STLVIQEKIMTHGKQTAETEFEVNLDGVNSSTNVISRSVAKDNSHQLFLSKINGNNKCAG
CEEEEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCC
HTECDAIIMDNASVRAIPEIAANCIDASLIHEAAIGKICGEQLIKLMTLGLTEAEAEEQI
CCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
INGFLK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]