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The map label for this gene is ydeE [H]

Identifier: 226949444

GI number: 226949444

Start: 2449786

End: 2450676

Strand: Reverse

Name: ydeE [H]

Synonym: CLM_2374

Alternate gene names: 226949444

Gene position: 2450676-2449786 (Counterclockwise)

Preceding gene: 226949446

Following gene: 226949443

Centisome position: 58.98

GC content: 30.42

Gene sequence:

>891_bases
ATGAATTATAGAAAAGATATAGAAAATTGCATTGAGTATATAGAAGAGCACATTAAAGAGCCTCTTACAGTTAATCAGAT
TACAAAAGAAATAGGGTATTCATCATATCATTTCTGCAGAGTTTTTTCTTTTTTAAAAGGTATGCCCTTAATGGAATATG
TAAGAAAAAGGAAGTTATCCCTATCAACAATAGACTTATTAGAAGACCAAAAAATAATTGATGTTGCCTTTAAGTGGGGA
TTTGAAACTCCCAGTAGTTTTGCAAGAGCCTTTAGAAAAGAGTTTGGATGTAGTCCAACTCAATATATTAAAAAAATGAA
ATCCTATTACAAAAGTGAAAATAATTTAATACTAGGTAAGTTTATGAATGATCCATATATAGTTAAAAAACATGGATTTA
AAGTTGCTGGATATGGTATTAAAACTAATGCGGCAGATAGTAAATATACAAAGGATGTAGCCTCCTTTTGGAGCAATTAT
AATGGAGAAAATCTAGAAAGTAAACTATACAAAATTCTATCACCCCTAAAACATGGGGAAGTTGGATTATGCATACCCTG
TTCTGATAGTGGAGATGTAACCTATTTATTAGGGGTTGTTGTTGAGGATTTTTCTAAAGTAACTTCTGATATGATAACTG
TTGAAGTACCAAAGGCTCAGTATGCAGTGTTTACTACAAATCCTGTTAATACGGTAGACAGCAAAGACCAAAGGGAATTT
GCAAAGATTATTAAAGAATCATGGAAATATATATTTGATGAATGGTTTAAAAATAATGATTACGAATATGATGAAGAAAA
ATTGGATTTTGAATTTTATGATGAGAGATGTCATTTAAGATCAGACACAGTTATGGATATTTATGTGCCAATAAAAAAGT
TGGGGAGGTGA

Upstream 100 bases:

>100_bases
TTACATTCAGTTTTAAGAATAAAAATAGCAAAATAAGAACAGAAAAACATTTTGTTTTGTTATATTATAATAATAGCTTC
ATGAAGTAGGTGAGTATGTA

Downstream 100 bases:

>100_bases
TATTAAATGATTAATTATTATGGAAGTTTATGTACAGTAATGTATGAGTTACTACATCCTCATGCACCAGAAGATGAGCT
GCAATTTTATTTACAATATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNYRKDIENCIEYIEEHIKEPLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEDQKIIDVAFKWG
FETPSSFARAFRKEFGCSPTQYIKKMKSYYKSENNLILGKFMNDPYIVKKHGFKVAGYGIKTNAADSKYTKDVASFWSNY
NGENLESKLYKILSPLKHGEVGLCIPCSDSGDVTYLLGVVVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDSKDQREF
AKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRSDTVMDIYVPIKKLGR

Sequences:

>Translated_296_residues
MNYRKDIENCIEYIEEHIKEPLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEDQKIIDVAFKWG
FETPSSFARAFRKEFGCSPTQYIKKMKSYYKSENNLILGKFMNDPYIVKKHGFKVAGYGIKTNAADSKYTKDVASFWSNY
NGENLESKLYKILSPLKHGEVGLCIPCSDSGDVTYLLGVVVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDSKDQREF
AKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRSDTVMDIYVPIKKLGR
>Mature_296_residues
MNYRKDIENCIEYIEEHIKEPLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLSLSTIDLLEDQKIIDVAFKWG
FETPSSFARAFRKEFGCSPTQYIKKMKSYYKSENNLILGKFMNDPYIVKKHGFKVAGYGIKTNAADSKYTKDVASFWSNY
NGENLESKLYKILSPLKHGEVGLCIPCSDSGDVTYLLGVVVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDSKDQREF
AKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRSDTVMDIYVPIKKLGR

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=107, Percent_Identity=31.7757009345794, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790857, Length=123, Percent_Identity=30.8943089430894, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081928, Length=97, Percent_Identity=29.8969072164948, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34650; Mature: 34650

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRKDIENCIEYIEEHIKEPLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
LSTIDLLEDQKIIDVAFKWGFETPSSFARAFRKEFGCSPTQYIKKMKSYYKSENNLILGK
HHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEE
FMNDPYIVKKHGFKVAGYGIKTNAADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGE
ECCCCEEEEECCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
VGLCIPCSDSGDVTYLLGVVVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDSKDQREF
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCHHHHH
AKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRSDTVMDIYVPIKKLGR
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHCHHCCCCCCEEEEEECHHHHCC
>Mature Secondary Structure
MNYRKDIENCIEYIEEHIKEPLTVNQITKEIGYSSYHFCRVFSFLKGMPLMEYVRKRKLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
LSTIDLLEDQKIIDVAFKWGFETPSSFARAFRKEFGCSPTQYIKKMKSYYKSENNLILGK
HHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEE
FMNDPYIVKKHGFKVAGYGIKTNAADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGE
ECCCCEEEEECCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
VGLCIPCSDSGDVTYLLGVVVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDSKDQREF
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCCCHHHHH
AKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRSDTVMDIYVPIKKLGR
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHCHHCCCCCCEEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]