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The map label for this gene is frlC [C]

Identifier: 226949428

GI number: 226949428

Start: 2431654

End: 2432511

Strand: Reverse

Name: frlC [C]

Synonym: CLM_2356

Alternate gene names: 226949428

Gene position: 2432511-2431654 (Counterclockwise)

Preceding gene: 226949429

Following gene: 226949427

Centisome position: 58.54

GC content: 25.99

Gene sequence:

>858_bases
ATGTTAAAACTTGCTTATAATACAAATGGATTAAGAAATATGCCATTAGAAGAAGCTATAAAACAAATATCAAATCATAA
CTATGATGGAGTAGAAATATCTTTGCATAAACAACATTTTCATCCATTAGATATTAATATAGAAGAAGTAAAAAAAATAA
AATCAACATTAAAAAGTTCTGGCTTAGTTTTATCTGATATAGCAACAGGTTGTGATGATATTTTAAGTGATGATAAGTTT
GAACCATCTATAATTTGTAAGGATTCTATTGGGAGAAAAAAACGTATTGAATTACTTATTAAAACAGCTGAAATTGCTGA
ATATCTAGGTGTTGATGTAATTAATTTTGCCGCAGGATTCAAATCTGACAAAGTTTCTAATAGTGAAGCATACGACTATT
TGAAACAAGGGATAAATTATTTATTAGTAAAATGCCCAAACACAACATTTGCTTTAGAACCTGAACCTGGTATGTTTATT
GAAAAAACAGAACAAGCTATAAAGTTAATTAATGAAATAAATAATCCAAGACTAATGTTAAACTTAGATATTGGACATGT
ATATTGTTGTGAAGAAAATCCAATTTTATCTATTAGAAGAAGCATTCCCTATGCAAGACATATTCATATAGAAGATATTA
AAAATGGAGTTCATTATCATCAAATACCAGGCACAGGAGATATTGATTTTAATACAATTTTTAAAGATTTAATTAAATAT
AACTATAAATATTACATTAGTGTAGAACTATATCATCATGCTGATGACTGGAATAATGCTTTAGATAAGAGTATAAAATA
CTTGAAACAAATAGAGCAGTATATAAGAGAATTTCCTAGTATAAAATTAGTACAATAA

Upstream 100 bases:

>100_bases
TAGAAGAAACTTGTTAATTTTAGTGAATTTATTATAAAAATATACTAGATTTATAAGTTTAAAATAGGATATTTGATTTC
AAAATTTAAAGGAGGAGAAT

Downstream 100 bases:

>100_bases
AGTTAAATGATTATGAATGAAACTTTATAAAATCTATAATAGAGTAATCATTAATTTTATAAAAAGGTGGAAGAAGGAGT
TATTATGAAGGGGTTGAAAT

Product: AP endonuclease

Products: NA

Alternate protein names: Isomerase; Xylose Isomerase Domain Protein TIM Barrel; Sugar Phosphate Isomerase/Epimerase; Abasic Site Repairing; Xylose Isomerase Domain Protein Tim Barrel; AP Endonuclease; Sugar Phosphate Isomerases/Epimerases; Endonuclease

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MLKLAYNTNGLRNMPLEEAIKQISNHNYDGVEISLHKQHFHPLDINIEEVKKIKSTLKSSGLVLSDIATGCDDILSDDKF
EPSIICKDSIGRKKRIELLIKTAEIAEYLGVDVINFAAGFKSDKVSNSEAYDYLKQGINYLLVKCPNTTFALEPEPGMFI
EKTEQAIKLINEINNPRLMLNLDIGHVYCCEENPILSIRRSIPYARHIHIEDIKNGVHYHQIPGTGDIDFNTIFKDLIKY
NYKYYISVELYHHADDWNNALDKSIKYLKQIEQYIREFPSIKLVQ

Sequences:

>Translated_285_residues
MLKLAYNTNGLRNMPLEEAIKQISNHNYDGVEISLHKQHFHPLDINIEEVKKIKSTLKSSGLVLSDIATGCDDILSDDKF
EPSIICKDSIGRKKRIELLIKTAEIAEYLGVDVINFAAGFKSDKVSNSEAYDYLKQGINYLLVKCPNTTFALEPEPGMFI
EKTEQAIKLINEINNPRLMLNLDIGHVYCCEENPILSIRRSIPYARHIHIEDIKNGVHYHQIPGTGDIDFNTIFKDLIKY
NYKYYISVELYHHADDWNNALDKSIKYLKQIEQYIREFPSIKLVQ
>Mature_285_residues
MLKLAYNTNGLRNMPLEEAIKQISNHNYDGVEISLHKQHFHPLDINIEEVKKIKSTLKSSGLVLSDIATGCDDILSDDKF
EPSIICKDSIGRKKRIELLIKTAEIAEYLGVDVINFAAGFKSDKVSNSEAYDYLKQGINYLLVKCPNTTFALEPEPGMFI
EKTEQAIKLINEINNPRLMLNLDIGHVYCCEENPILSIRRSIPYARHIHIEDIKNGVHYHQIPGTGDIDFNTIFKDLIKY
NYKYYISVELYHHADDWNNALDKSIKYLKQIEQYIREFPSIKLVQ

Specific function: Not Clear, May Be Involved In An Isomerization Step. [C]

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32820; Mature: 32820

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLAYNTNGLRNMPLEEAIKQISNHNYDGVEISLHKQHFHPLDINIEEVKKIKSTLKSS
CEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
GLVLSDIATGCDDILSDDKFEPSIICKDSIGRKKRIELLIKTAEIAEYLGVDVINFAAGF
CEEHHHHHCCHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
KSDKVSNSEAYDYLKQGINYLLVKCPNTTFALEPEPGMFIEKTEQAIKLINEINNPRLML
CCCCCCCHHHHHHHHHCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
NLDIGHVYCCEENPILSIRRSIPYARHIHIEDIKNGVHYHQIPGTGDIDFNTIFKDLIKY
EECCCEEEEECCCCCHHHHHCCCCCEEEEHHHHHCCCEEEECCCCCCCCHHHHHHHHHHC
NYKYYISVELYHHADDWNNALDKSIKYLKQIEQYIREFPSIKLVQ
CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MLKLAYNTNGLRNMPLEEAIKQISNHNYDGVEISLHKQHFHPLDINIEEVKKIKSTLKSS
CEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
GLVLSDIATGCDDILSDDKFEPSIICKDSIGRKKRIELLIKTAEIAEYLGVDVINFAAGF
CEEHHHHHCCHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
KSDKVSNSEAYDYLKQGINYLLVKCPNTTFALEPEPGMFIEKTEQAIKLINEINNPRLML
CCCCCCCHHHHHHHHHCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
NLDIGHVYCCEENPILSIRRSIPYARHIHIEDIKNGVHYHQIPGTGDIDFNTIFKDLIKY
EECCCEEEEECCCCCHHHHHCCCCCEEEEHHHHHCCCEEEECCCCCCCCHHHHHHHHHHC
NYKYYISVELYHHADDWNNALDKSIKYLKQIEQYIREFPSIKLVQ
CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA