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The map label for this gene is yhcS [H]

Identifier: 226949416

GI number: 226949416

Start: 2416561

End: 2417199

Strand: Reverse

Name: yhcS [H]

Synonym: CLM_2344

Alternate gene names: 226949416

Gene position: 2417199-2416561 (Counterclockwise)

Preceding gene: 226949417

Following gene: 226949415

Centisome position: 58.17

GC content: 32.39

Gene sequence:

>639_bases
TTGTATTTAAAAAGCGTCATAAACATGAGTAAATTTAAGTTATCATTTAAAGAGTTATCATTAGTAAAAATCTTAAGTCT
AGGAACTATAGTACTAGGCTTAGGATGTATTTCTTGGTCATTAATTAATATATGGTCACAGCCAAAGAATTCTTACAATG
AAGCCACTGATAATGTAGAATATTTATCTGAATTAGACTCTTACGATAAAAGTACAGTTATTTATGATGTGAATCCTGAA
AAGGGAGATAACTTTGGAAGTCTTATAATGCCAACTCTAAAGCAAAAATTTCCCATTATACAGGGAACTGATGATAAGGA
GTTGAAAAAAGGTGTAGGCCACTTTCTTGAAAGTGCACTACCTGGCGAAGAAGATAACTGTGTGCTTTCAGGACATCGAG
ATACTGTATTTAGTCAAATAGGTAAACTCAAAATAGGAGATCCATTGATTGTGCAAACGTCAGCTGGAATATTTACTTAT
AGGGTGAGTGAAACTCGAATAGTTAAGAAAGATGATAAAACGGTAATTGTGCCTTCAGATAATGCGAAACTTACTATGAC
CACTTGTTATCCATTTTATTTTATTGGATATGCTCCAGAGCGTTATATAGTTTTGGCAAACTTAGTGAAGAATAAATAA

Upstream 100 bases:

>100_bases
GTAACTACAGCTGGAAAATGGAAACTTCCAAATACTGCTACACATGTATACGGAATATTACTAGCAGGTTCTGTATTAGC
ACTACTAGGCGCAGGTGGAT

Downstream 100 bases:

>100_bases
AACAGCATCTTAGGATGCTGTTTTTTCTTATGGATAAGTTTAGAAGAATTTAGAGTGAACCGGTGGAGCTGAGCTAAGTT
ATGTAATTTAAATGGTGGAA

Product: sortase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MYLKSVINMSKFKLSFKELSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVLANLVKNK

Sequences:

>Translated_212_residues
MYLKSVINMSKFKLSFKELSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVLANLVKNK
>Mature_212_residues
MYLKSVINMSKFKLSFKELSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVEYLSELDSYDKSTVIYDVNPE
KGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESALPGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTY
RVSETRIVKKDDKTVIVPSDNAKLTMTTCYPFYFIGYAPERYIVLANLVKNK

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005754 [H]

Pfam domain/function: PF04203 Sortase [H]

EC number: NA

Molecular weight: Translated: 23765; Mature: 23765

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKSVINMSKFKLSFKELSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVE
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YLSELDSYDKSTVIYDVNPEKGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESAL
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHC
PGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTYRVSETRIVKKDDKTVIVPSD
CCCCCCEEEECCCHHHHHHHCCEECCCCEEEEECCCEEEEEECCEEEEECCCCEEEEECC
NAKLTMTTCYPFYFIGYAPERYIVLANLVKNK
CCEEEEEEECEEEEEEECCCCEEEEEEHHCCC
>Mature Secondary Structure
MYLKSVINMSKFKLSFKELSLVKILSLGTIVLGLGCISWSLINIWSQPKNSYNEATDNVE
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YLSELDSYDKSTVIYDVNPEKGDNFGSLIMPTLKQKFPIIQGTDDKELKKGVGHFLESAL
HHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHC
PGEEDNCVLSGHRDTVFSQIGKLKIGDPLIVQTSAGIFTYRVSETRIVKKDDKTVIVPSD
CCCCCCEEEECCCHHHHHHHCCEECCCCEEEEECCCEEEEEECCEEEEECCCCEEEEECC
NAKLTMTTCYPFYFIGYAPERYIVLANLVKNK
CCEEEEEEECEEEEEEECCCCEEEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]