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The map label for this gene is csoS1B [H]

Identifier: 226949392

GI number: 226949392

Start: 2393044

End: 2393841

Strand: Reverse

Name: csoS1B [H]

Synonym: CLM_2317

Alternate gene names: 226949392

Gene position: 2393841-2393044 (Counterclockwise)

Preceding gene: 226949393

Following gene: 226949391

Centisome position: 57.61

GC content: 32.33

Gene sequence:

>798_bases
ATGCAAGCGCTTGGTTTAATAGAAACAAAGGGATTACTTGCAGCTGTTGAAGCAGCTGATACAATGGTGAAATCAGCAGA
TGTAAGTATTATCGAAAAAACTTATGTAGGTGGCGGCCTTGTTACAATTTCAGTTACAGGGGATGTAGGTGCAGTAAAAG
CATCTATAGAAGCTGGAGTAGCAGCTGTAAAAAAACTTGATGAAGGATTTTTAGTTTCAGAACATGTAATTCCACGTCCC
CATGAGGAACTGGAAAGCATAATAGGACCTAATACTCCACCAGAAGATCCATCATCTAATGATAATACAGAAAATGTGGA
AGATGCAGATGATACAGAGGCTGTAGAAAAAGCAGAGGATACAGAAAAGGTAGAAAATACAAAAGCTGTAGACAGTGTAG
AAGATACAGAATCCGTAGAAGTTACAAAAGATATAGTAGATGCAAAGAATGTAGAAAATACAAAAAAAGCTGAAACTGTA
AAAGATGTAAAAGCTGTAGATAACACAGAACATGTAGATACTAAGAATAATATTAAAGAAAATCAACATGGATTAGATGG
GGATTTAGATAAACTACATAAGTTAAATTTAGAAAATCTACACAAAGAAGATGTAGACAATTTAATAAGACAAAATGGTA
TAGAAAAAACCATTTTAATATTAGCTAAGCTAAAAGTTGTTAAGCTTAGAAATCTAGCTCGTGAATATAAGGATCTTGGA
ATTGCAGGTAGAACAATTTCAAAAGCAGGTAAAAATTTATTAATTAACAAATTTAAATTATATTACGAGAAAAATTAG

Upstream 100 bases:

>100_bases
CTAAAGTGGTTTGGGGATCCCCAGATAAAGCTAGGGTATTTTATACAACATATCCAGCAAATTGGGCGGATCTTTTATAG
AAGATTAGGAGGATTTACCT

Downstream 100 bases:

>100_bases
CTATTTTAAAGGTTACGAAAGGAAGTAAGGAATAATGGAAAACTTTGATAAGGATTTGCGTTCAATACAACAAGCGAGAG
ATCTTGCTAGACTTGGAAAA

Product: microcompartments family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MQALGLIETKGLLAAVEAADTMVKSADVSIIEKTYVGGGLVTISVTGDVGAVKASIEAGVAAVKKLDEGFLVSEHVIPRP
HEELESIIGPNTPPEDPSSNDNTENVEDADDTEAVEKAEDTEKVENTKAVDSVEDTESVEVTKDIVDAKNVENTKKAETV
KDVKAVDNTEHVDTKNNIKENQHGLDGDLDKLHKLNLENLHKEDVDNLIRQNGIEKTILILAKLKVVKLRNLAREYKDLG
IAGRTISKAGKNLLINKFKLYYEKN

Sequences:

>Translated_265_residues
MQALGLIETKGLLAAVEAADTMVKSADVSIIEKTYVGGGLVTISVTGDVGAVKASIEAGVAAVKKLDEGFLVSEHVIPRP
HEELESIIGPNTPPEDPSSNDNTENVEDADDTEAVEKAEDTEKVENTKAVDSVEDTESVEVTKDIVDAKNVENTKKAETV
KDVKAVDNTEHVDTKNNIKENQHGLDGDLDKLHKLNLENLHKEDVDNLIRQNGIEKTILILAKLKVVKLRNLAREYKDLG
IAGRTISKAGKNLLINKFKLYYEKN
>Mature_265_residues
MQALGLIETKGLLAAVEAADTMVKSADVSIIEKTYVGGGLVTISVTGDVGAVKASIEAGVAAVKKLDEGFLVSEHVIPRP
HEELESIIGPNTPPEDPSSNDNTENVEDADDTEAVEKAEDTEKVENTKAVDSVEDTESVEVTKDIVDAKNVENTKKAETV
KDVKAVDNTEHVDTKNNIKENQHGLDGDLDKLHKLNLENLHKEDVDNLIRQNGIEKTILILAKLKVVKLRNLAREYKDLG
IAGRTISKAGKNLLINKFKLYYEKN

Specific function: Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=88, Percent_Identity=53.4090909090909, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 28873; Mature: 28873

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALGLIETKGLLAAVEAADTMVKSADVSIIEKTYVGGGLVTISVTGDVGAVKASIEAGV
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
AAVKKLDEGFLVSEHVIPRPHEELESIIGPNTPPEDPSSNDNTENVEDADDTEAVEKAED
HHHHHHCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
TEKVENTKAVDSVEDTESVEVTKDIVDAKNVENTKKAETVKDVKAVDNTEHVDTKNNIKE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
NQHGLDGDLDKLHKLNLENLHKEDVDNLIRQNGIEKTILILAKLKVVKLRNLAREYKDLG
HCCCCCCCHHHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
IAGRTISKAGKNLLINKFKLYYEKN
CCCHHHHHCCCHHHEEHEEEEEECC
>Mature Secondary Structure
MQALGLIETKGLLAAVEAADTMVKSADVSIIEKTYVGGGLVTISVTGDVGAVKASIEAGV
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
AAVKKLDEGFLVSEHVIPRPHEELESIIGPNTPPEDPSSNDNTENVEDADDTEAVEKAED
HHHHHHCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
TEKVENTKAVDSVEDTESVEVTKDIVDAKNVENTKKAETVKDVKAVDNTEHVDTKNNIKE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
NQHGLDGDLDKLHKLNLENLHKEDVDNLIRQNGIEKTILILAKLKVVKLRNLAREYKDLG
HCCCCCCCHHHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
IAGRTISKAGKNLLINKFKLYYEKN
CCCHHHHHCCCHHHEEHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934888; 9696760 [H]