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The map label for this gene is yfjK [H]

Identifier: 226949375

GI number: 226949375

Start: 2365836

End: 2368376

Strand: Reverse

Name: yfjK [H]

Synonym: CLM_2298

Alternate gene names: 226949375

Gene position: 2368376-2365836 (Counterclockwise)

Preceding gene: 226949376

Following gene: 226949374

Centisome position: 57.0

GC content: 23.3

Gene sequence:

>2541_bases
ATGTTTATAGAAGAATTAGTTAAGGATATATATGAAGATGAATACTTTATTGAGTTATATGATAAAATATGTAATTTATT
TGTGAGAGCTACATTTAAATTTAAAACTGAAAAATTAAGCGTAAAAGAGTTAAAAGATATTTTAAGATTTGCAGATATAT
TGTCAAATTCCCAAGAAGCGCTAGCAAAAAATAAAGCATATAAAATCATAAGTTTATTAAAAAAAACATATGAAAAGAAT
GAAGTTTATAAAGCATATTCTATTGCGATATTGAAAAAATTATCGAATTTTCCAGCATTGGATAATTGTGAAGACATACA
ATTGCCTATAGATCGTGAAATTGAATATGGATTAAAGAAAATTGAATATAAAATACCTATAGGTAATGGACATTTTACCC
CTACACAATATAAAATTTATAAAATGATAAGACAAAGTAATTTCTTTAGTTTTTCAGGTCCAACATCTATGGGAAAATCA
TTTATTATTAAACAATTTATACTAGAAAAAATACAAAAAGATAATTTTGTTAAAGGTTTTTGTATATTGGTTCCTAGTAA
GGCATTAATTAAACAATATCTATTAGAATTTATAAAAGTATTAAGTGAATTAAACATTACTAAATTTAATGTTTTAACAA
CTCCTAATGTATTAGATTTTACTGAATTTGAAGAAGATAACTTTATATTTATATTAACACCTGAAAGACTGCTAAATTTA
CTTAGTTCTACAACTAAAGTTCAATTAGATTATCTTATAATTGATGAAGCACATAAGCTATTTAATGATGATGATAGGGC
ATTAACATACTATACAAGTATTGATTATTGTATGACAAAATTTAAATTCATAAAAGTAATTATGTCATCTCCACTAATTA
AAAATCCTAATATTTATGGAAATATGTATTATAGAAAAGAATCAACTTCAATAAGAGCATTGGAAACACCAGTAAGTCAA
AATTTATTTTACATAGATTTATTAAAAACTACTATAGATTTTTATGATGATAACAAACCGTATCATTTTAATATTTCAAG
AATCCTAAAACTTCATACTGCTAATGGAATATTACATAAGGTTGGGCAAGGGAATAGTTTAATATACCTAAATAGTAAAA
ATGAAATGATAGAATATGCTATAGATTTATGTGCTTATTTTAAAGAAAATAATATAGATATATTAAATGTTGAAGAAAAA
GCAAAAGTAAATCAAGTATGTGAATTAATTGCTAAAATTATTCATCCTGAATACTATTTGATAGAGTGTATAAAATTAGG
AATAGGATATCATTATGGTAATTTACCACTTATAATTAGGGAACGAGTTGAAGAATTGTTCAAAAATGGGACTGTAAAAT
ACTTATTTTGTACAAGCACTTTACTTGAAGGTGTAAATATGCCAGCTAAAAATGTGTTTATATTCTCAGATAAAATTGGT
AGAAAAAATATATCCAAAATTGATTTTTGGAATCTAGCAGGTAGAGCAGGCCGATTAGGCTATGAATTTTATGGGAATAT
TTTCTGCTTAAAAATAAAAGAAAATATGTGGAAACATAAGGAGATATTCATTGAAAAAGATGATATAAGTGCACAAGATA
TTTTAAAAGACACATTAAAGAAGAAAAATAAAGAAATTAAAAACGTTCTATTAGAGGAAGAAATTAAACAAGATATAAGC
AAAAAAGAAAAATATATTAATTATATATCTAATATTATTCAAATTGATACAATAGCAAAGCAAGATACTTCAATGATTAA
GCAAATAGCTGAAATTGATAATGAAACATTGGATATCTGCAAAGAATTTGAAAATAAGGTTGATATTGATGTTCTAAATG
CTAATAGATCTATAGATATAAAAGTTCAAAATAATGTTAACAATTACTTAGTTATGAATAAAATGCCATCAATAATAAAT
ACAAAAGTATGTTTTTCAGTTTTAAGTAATATGTACGACCTGTATAGATGGGATATAAAAGAAAAAAATTTAAAAAATAG
AGGCGCTTTAAAATATATAGCATTATTAATGGCAGAATGGATGAATGATATGCCATTAAGTAGAATAATACATGGAACTA
TGCAGTATTATCATAAGAATGCTAAAGAAGTTTGGGTAAATAATCAACCGATAGGTATATTTGATATATCTAATCAATCT
CATATAAATATACTAATTAATCAAACTATAAATGATATTGAACATATATTGAAATTTGACTTGGAAAAATATTTCAATCA
TTATTATATGTTACTTAAAAGTAAATATGGAGAAGAATGCATTGGTGCTAATTGGGCAATGAATTTAGAATTTGGGACTA
GAAATAATAAAAACATAATTATACAAAACAATGGATTTTCAAGATATTGTGCTAATATTTTACTAACTGAATATACAAAA
TACTTAGTATTTGAAGGCGATATTTTAAAAACAATTGATATTAATATTTTAAATAGTGAGGAAATAAGAAATATTGTATT
AAAGAATGAATTAAAGACATGGTTTGGAATAAAAAATATTTATATAGATAATATTGATTAA

Upstream 100 bases:

>100_bases
ATCATAATTTTTATATATATTTCATTCCTTTTTTTGATATAGATAAAACAAGAAAAGATATAATTAAACAATTAACTCAA
TAAATTAGGAGGAAAAATAA

Downstream 100 bases:

>100_bases
ATAATCCCAAGCAAAGTAGCGTTGGATTCTTTTGAAATTTCATTTAGTGAAAACTTTGCGAATAGTTGAGACATCGTGGT
GTTGCAATATTTTAAAACGT

Product: DEAD/DEAH box helicase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 846; Mature: 846

Protein sequence:

>846_residues
MFIEELVKDIYEDEYFIELYDKICNLFVRATFKFKTEKLSVKELKDILRFADILSNSQEALAKNKAYKIISLLKKTYEKN
EVYKAYSIAILKKLSNFPALDNCEDIQLPIDREIEYGLKKIEYKIPIGNGHFTPTQYKIYKMIRQSNFFSFSGPTSMGKS
FIIKQFILEKIQKDNFVKGFCILVPSKALIKQYLLEFIKVLSELNITKFNVLTTPNVLDFTEFEEDNFIFILTPERLLNL
LSSTTKVQLDYLIIDEAHKLFNDDDRALTYYTSIDYCMTKFKFIKVIMSSPLIKNPNIYGNMYYRKESTSIRALETPVSQ
NLFYIDLLKTTIDFYDDNKPYHFNISRILKLHTANGILHKVGQGNSLIYLNSKNEMIEYAIDLCAYFKENNIDILNVEEK
AKVNQVCELIAKIIHPEYYLIECIKLGIGYHYGNLPLIIRERVEELFKNGTVKYLFCTSTLLEGVNMPAKNVFIFSDKIG
RKNISKIDFWNLAGRAGRLGYEFYGNIFCLKIKENMWKHKEIFIEKDDISAQDILKDTLKKKNKEIKNVLLEEEIKQDIS
KKEKYINYISNIIQIDTIAKQDTSMIKQIAEIDNETLDICKEFENKVDIDVLNANRSIDIKVQNNVNNYLVMNKMPSIIN
TKVCFSVLSNMYDLYRWDIKEKNLKNRGALKYIALLMAEWMNDMPLSRIIHGTMQYYHKNAKEVWVNNQPIGIFDISNQS
HINILINQTINDIEHILKFDLEKYFNHYYMLLKSKYGEECIGANWAMNLEFGTRNNKNIIIQNNGFSRYCANILLTEYTK
YLVFEGDILKTIDINILNSEEIRNIVLKNELKTWFGIKNIYIDNID

Sequences:

>Translated_846_residues
MFIEELVKDIYEDEYFIELYDKICNLFVRATFKFKTEKLSVKELKDILRFADILSNSQEALAKNKAYKIISLLKKTYEKN
EVYKAYSIAILKKLSNFPALDNCEDIQLPIDREIEYGLKKIEYKIPIGNGHFTPTQYKIYKMIRQSNFFSFSGPTSMGKS
FIIKQFILEKIQKDNFVKGFCILVPSKALIKQYLLEFIKVLSELNITKFNVLTTPNVLDFTEFEEDNFIFILTPERLLNL
LSSTTKVQLDYLIIDEAHKLFNDDDRALTYYTSIDYCMTKFKFIKVIMSSPLIKNPNIYGNMYYRKESTSIRALETPVSQ
NLFYIDLLKTTIDFYDDNKPYHFNISRILKLHTANGILHKVGQGNSLIYLNSKNEMIEYAIDLCAYFKENNIDILNVEEK
AKVNQVCELIAKIIHPEYYLIECIKLGIGYHYGNLPLIIRERVEELFKNGTVKYLFCTSTLLEGVNMPAKNVFIFSDKIG
RKNISKIDFWNLAGRAGRLGYEFYGNIFCLKIKENMWKHKEIFIEKDDISAQDILKDTLKKKNKEIKNVLLEEEIKQDIS
KKEKYINYISNIIQIDTIAKQDTSMIKQIAEIDNETLDICKEFENKVDIDVLNANRSIDIKVQNNVNNYLVMNKMPSIIN
TKVCFSVLSNMYDLYRWDIKEKNLKNRGALKYIALLMAEWMNDMPLSRIIHGTMQYYHKNAKEVWVNNQPIGIFDISNQS
HINILINQTINDIEHILKFDLEKYFNHYYMLLKSKYGEECIGANWAMNLEFGTRNNKNIIIQNNGFSRYCANILLTEYTK
YLVFEGDILKTIDINILNSEEIRNIVLKNELKTWFGIKNIYIDNID
>Mature_846_residues
MFIEELVKDIYEDEYFIELYDKICNLFVRATFKFKTEKLSVKELKDILRFADILSNSQEALAKNKAYKIISLLKKTYEKN
EVYKAYSIAILKKLSNFPALDNCEDIQLPIDREIEYGLKKIEYKIPIGNGHFTPTQYKIYKMIRQSNFFSFSGPTSMGKS
FIIKQFILEKIQKDNFVKGFCILVPSKALIKQYLLEFIKVLSELNITKFNVLTTPNVLDFTEFEEDNFIFILTPERLLNL
LSSTTKVQLDYLIIDEAHKLFNDDDRALTYYTSIDYCMTKFKFIKVIMSSPLIKNPNIYGNMYYRKESTSIRALETPVSQ
NLFYIDLLKTTIDFYDDNKPYHFNISRILKLHTANGILHKVGQGNSLIYLNSKNEMIEYAIDLCAYFKENNIDILNVEEK
AKVNQVCELIAKIIHPEYYLIECIKLGIGYHYGNLPLIIRERVEELFKNGTVKYLFCTSTLLEGVNMPAKNVFIFSDKIG
RKNISKIDFWNLAGRAGRLGYEFYGNIFCLKIKENMWKHKEIFIEKDDISAQDILKDTLKKKNKEIKNVLLEEEIKQDIS
KKEKYINYISNIIQIDTIAKQDTSMIKQIAEIDNETLDICKEFENKVDIDVLNANRSIDIKVQNNVNNYLVMNKMPSIIN
TKVCFSVLSNMYDLYRWDIKEKNLKNRGALKYIALLMAEWMNDMPLSRIIHGTMQYYHKNAKEVWVNNQPIGIFDISNQS
HINILINQTINDIEHILKFDLEKYFNHYYMLLKSKYGEECIGANWAMNLEFGTRNNKNIIIQNNGFSRYCANILLTEYTK
YLVFEGDILKTIDINILNSEEIRNIVLKNELKTWFGIKNIYIDNID

Specific function: Unknown

COG id: COG1204

COG function: function code R; Superfamily II helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI193211480, Length=131, Percent_Identity=37.4045801526718, Blast_Score=71, Evalue=4e-12,
Organism=Escherichia coli, GI1788980, Length=89, Percent_Identity=43.8202247191011, Blast_Score=93, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17552356, Length=112, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71995032, Length=102, Percent_Identity=36.2745098039216, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71995036, Length=102, Percent_Identity=36.2745098039216, Blast_Score=74, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17542826, Length=157, Percent_Identity=31.2101910828025, Blast_Score=73, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321020, Length=440, Percent_Identity=26.5909090909091, Blast_Score=87, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6321710, Length=422, Percent_Identity=24.8815165876777, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323430, Length=156, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17933658, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24660651, Length=413, Percent_Identity=22.5181598062954, Blast_Score=73, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17933644, Length=101, Percent_Identity=34.6534653465347, Blast_Score=70, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 99299; Mature: 99299

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00239 RECEPTOR_TYR_KIN_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIEELVKDIYEDEYFIELYDKICNLFVRATFKFKTEKLSVKELKDILRFADILSNSQEA
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHHCCCHHH
LAKNKAYKIISLLKKTYEKNEVYKAYSIAILKKLSNFPALDNCEDIQLPIDREIEYGLKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCEE
IEYKIPIGNGHFTPTQYKIYKMIRQSNFFSFSGPTSMGKSFIIKQFILEKIQKDNFVKGF
EEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEE
CILVPSKALIKQYLLEFIKVLSELNITKFNVLTTPNVLDFTEFEEDNFIFILTPERLLNL
EEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCEEEEECHHHHHHH
LSSTTKVQLDYLIIDEAHKLFNDDDRALTYYTSIDYCMTKFKFIKVIMSSPLIKNPNIYG
HCCCCEEEEEEEEEECHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEE
NMYYRKESTSIRALETPVSQNLFYIDLLKTTIDFYDDNKPYHFNISRILKLHTANGILHK
EEEEEECCCCEEEECCCCCCCEEEEEEHHHHHHHCCCCCCEEEEHHHHHHHHHCCCHHHH
VGQGNSLIYLNSKNEMIEYAIDLCAYFKENNIDILNVEEKAKVNQVCELIAKIIHPEYYL
CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCHHH
IECIKLGIGYHYGNLPLIIRERVEELFKNGTVKYLFCTSTLLEGVNMPAKNVFIFSDKIG
HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEEEEEECCCC
RKNISKIDFWNLAGRAGRLGYEFYGNIFCLKIKENMWKHKEIFIEKDDISAQDILKDTLK
CCCCCCCCCHHCCCCCCCCCCEEECCEEEEEECCCCCCCHHEEEECCCCCHHHHHHHHHH
KKNKEIKNVLLEEEIKQDISKKEKYINYISNIIQIDTIAKQDTSMIKQIAEIDNETLDIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KEFENKVDIDVLNANRSIDIKVQNNVNNYLVMNKMPSIINTKVCFSVLSNMYDLYRWDIK
HHHCCCCCEEEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
EKNLKNRGALKYIALLMAEWMNDMPLSRIIHGTMQYYHKNAKEVWVNNQPIGIFDISNQS
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCC
HINILINQTINDIEHILKFDLEKYFNHYYMLLKSKYGEECIGANWAMNLEFGTRNNKNII
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECCCCCCEEE
IQNNGFSRYCANILLTEYTKYLVFEGDILKTIDINILNSEEIRNIVLKNELKTWFGIKNI
EECCCHHHHHHHHHHHHHHHHEEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCEE
YIDNID
EEECCC
>Mature Secondary Structure
MFIEELVKDIYEDEYFIELYDKICNLFVRATFKFKTEKLSVKELKDILRFADILSNSQEA
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHHCCCHHH
LAKNKAYKIISLLKKTYEKNEVYKAYSIAILKKLSNFPALDNCEDIQLPIDREIEYGLKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCEE
IEYKIPIGNGHFTPTQYKIYKMIRQSNFFSFSGPTSMGKSFIIKQFILEKIQKDNFVKGF
EEEEEECCCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEE
CILVPSKALIKQYLLEFIKVLSELNITKFNVLTTPNVLDFTEFEEDNFIFILTPERLLNL
EEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCEEEEECHHHHHHH
LSSTTKVQLDYLIIDEAHKLFNDDDRALTYYTSIDYCMTKFKFIKVIMSSPLIKNPNIYG
HCCCCEEEEEEEEEECHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEE
NMYYRKESTSIRALETPVSQNLFYIDLLKTTIDFYDDNKPYHFNISRILKLHTANGILHK
EEEEEECCCCEEEECCCCCCCEEEEEEHHHHHHHCCCCCCEEEEHHHHHHHHHCCCHHHH
VGQGNSLIYLNSKNEMIEYAIDLCAYFKENNIDILNVEEKAKVNQVCELIAKIIHPEYYL
CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCHHH
IECIKLGIGYHYGNLPLIIRERVEELFKNGTVKYLFCTSTLLEGVNMPAKNVFIFSDKIG
HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCCEEEEEECCCC
RKNISKIDFWNLAGRAGRLGYEFYGNIFCLKIKENMWKHKEIFIEKDDISAQDILKDTLK
CCCCCCCCCHHCCCCCCCCCCEEECCEEEEEECCCCCCCHHEEEECCCCCHHHHHHHHHH
KKNKEIKNVLLEEEIKQDISKKEKYINYISNIIQIDTIAKQDTSMIKQIAEIDNETLDIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KEFENKVDIDVLNANRSIDIKVQNNVNNYLVMNKMPSIINTKVCFSVLSNMYDLYRWDIK
HHHCCCCCEEEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
EKNLKNRGALKYIALLMAEWMNDMPLSRIIHGTMQYYHKNAKEVWVNNQPIGIFDISNQS
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCC
HINILINQTINDIEHILKFDLEKYFNHYYMLLKSKYGEECIGANWAMNLEFGTRNNKNII
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECCCCCCEEE
IQNNGFSRYCANILLTEYTKYLVFEGDILKTIDINILNSEEIRNIVLKNELKTWFGIKNI
EECCCHHHHHHHHHHHHHHHHEEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCEE
YIDNID
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]