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The map label for this gene is ykoC [H]

Identifier: 226949269

GI number: 226949269

Start: 2250151

End: 2250906

Strand: Reverse

Name: ykoC [H]

Synonym: CLM_2188

Alternate gene names: 226949269

Gene position: 2250906-2250151 (Counterclockwise)

Preceding gene: 226949270

Following gene: 226949268

Centisome position: 54.17

GC content: 25.79

Gene sequence:

>756_bases
ATGACCCAAAAAAATTATTTTATAGATAATATGAATCCTTTTTTAAAATTACTTATTCTTATAACAATAACTATTATAGG
ATCTTTAGATTTTAAGCCCTATGCTTCAAGTATTTTGATTATTAGTGGAATTATAATTGCCTCTATTTTTAGCAGCTTAG
ATACATTAGAAATATTAAATTCTGTTAAAGGATTTATATTAATGTCAATAACTTTTATGTGTGTTATTTTAGTTCTCAGA
TATATTAGTGGAGAACCTCTTAAGGTTGTTGCTGTATTAGGATTAGGGTTTAGAATAATACTAATAAGTATTTATACTTC
TATTTTTGTAAAAACGACGGATCCTACAGAGTTTGTTATATCCTTAATAAAATATTTTAAGATGCCACCTAAAGTGGGGT
ATGCTTTTTTAACTGCCTATAGATTTCTTCCTACTTTTAAAGAGGAACTTCAAACTATAAAATATGCTTACAAAGTAAGA
GGAATTGTAGAAAGTAAAAATCCTTTTATTAAGGTATGGAATTCAAAAAGATATATACTTCCCATGATGGCAAATGCGGT
TAGAAAGGGTATAAGAATATCCATGGCTATGGAAACTCGTGCTTTTGATAAATATAAAACTAGAACATATTATAGAGAGC
TTCATATGTCTATAAATGAAATTATTATGACAGCCATGTATATTTTATATATTATTTCTGTTGCAGTTATACTTTATTTA
AATAATCTTGTTACTTTTTCTGTTAAGTATATATAA

Upstream 100 bases:

>100_bases
TTGTAATAGAGTAATATATTTGGAAAATGGAGAAGTAAAATATGAAGGTTCACCAAAAAATATGAAAGAGAATATTTTTA
CCTAAAAAGAAGGAGAAAAA

Downstream 100 bases:

>100_bases
TAATAAAACATTGGAGGGATAAAATATGCCGTTTAAACATGAAAAAATTACTTATGGATTTCCACAGGACCCATATGATA
ATAGTATTATTAAAGAATTA

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTQKNYFIDNMNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKGFILMSITFMCVILVLR
YISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAYKVR
GIVESKNPFIKVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMSINEIIMTAMYILYIISVAVILYL
NNLVTFSVKYI

Sequences:

>Translated_251_residues
MTQKNYFIDNMNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKGFILMSITFMCVILVLR
YISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAYKVR
GIVESKNPFIKVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMSINEIIMTAMYILYIISVAVILYL
NNLVTFSVKYI
>Mature_250_residues
TQKNYFIDNMNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKGFILMSITFMCVILVLRY
ISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAYKVRG
IVESKNPFIKVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMSINEIIMTAMYILYIISVAVILYLN
NLVTFSVKYI

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 28934; Mature: 28803

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQKNYFIDNMNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILN
CCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVKGFILMSITFMCVILVLRYISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVI
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
SLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAYKVRGIVESKNPFIKVWNSKRYIL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
PMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMSINEIIMTAMYILYIISVAVILYL
HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNLVTFSVKYI
HHHHHEEEECC
>Mature Secondary Structure 
TQKNYFIDNMNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILN
CCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVKGFILMSITFMCVILVLRYISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVI
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHH
SLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAYKVRGIVESKNPFIKVWNSKRYIL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
PMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMSINEIIMTAMYILYIISVAVILYL
HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NNLVTFSVKYI
HHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]